/* * h5tovelo.c by Eh Tan and Luis Armendariz. * Copyright (C) 2006, California Institute of Technology. * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA */ #include #include #include "hdf5.h" #include "h5util.h" static const char usage[] = "Convert h5 files to velo files, for restart purpose\n" "\n" "Usage: h5tovelo modelname step\n" "\n" "modelname: prefix of the CitcomS HDF5 datafile\n" "step: time step\n"; int main(int argc, char *argv[]) { char filename1[100]; char filename2[100]; char prefix[100]; hid_t h5file1, h5file2; hid_t input; herr_t status; int caps; int cap; int nprocx, nprocy, nprocz; int nodex, nodey, nodez; int step; float time; field_t *velocity; field_t *temperature; /************************************************************************ * Parse command-line parameters. * ************************************************************************/ /* * HDF5 file must be specified as first argument. */ if (argc < 3 || argc > 4) { fputs(usage, stderr); return EXIT_FAILURE; } /* * Recognize help arguments. */ if (strcmp(argv[1], "-h") == 0 || strcmp(argv[1], "--help") == 0) { fputs(usage, stderr); return EXIT_FAILURE; } /* * Construct filenames */ sscanf(argv[1], "%s", prefix); snprintf(filename1, 99, "%s.h5", prefix); sscanf(argv[2], "%d", &step); snprintf(filename2, 99, "%s.%d.h5", prefix, step); /* * Open HDF5 file (read-only). Complain if invalid. */ h5file1 = H5Fopen(filename1, H5F_ACC_RDONLY, H5P_DEFAULT); if (h5file1 < 0) { fprintf(stderr, "Could not open HDF5 file \"%s\"\n", filename1); return EXIT_FAILURE; } /* * Read model parameters from file1 */ input = H5Gopen(h5file1, "input"); if (input < 0) { fprintf(stderr, "Could not open /input group in \"%s\"\n", filename1); status = H5Fclose(h5file1); return EXIT_FAILURE; } status = get_attribute_int(input, "nproc_surf", &caps); status = get_attribute_int(input, "nprocx", &nprocx); status = get_attribute_int(input, "nprocy", &nprocy); status = get_attribute_int(input, "nprocz", &nprocz); status = get_attribute_int(input, "nodex", &nodex); status = get_attribute_int(input, "nodey", &nodey); status = get_attribute_int(input, "nodez", &nodez); status = H5Gclose(input); status = H5Fclose(h5file1); /* * Open HDF5 file (read-only). Complain if invalid. */ h5file2 = H5Fopen(filename2, H5F_ACC_RDONLY, H5P_DEFAULT); if (h5file2 < 0) { fprintf(stderr, "Could not open HDF5 file \"%s\"\n", filename2); return EXIT_FAILURE; } input = H5Gopen(h5file2, "/"); status = get_attribute_float(input, "time", &time); status = H5Gclose(input); /* * Read data from file1 and file2 */ velocity = open_field(h5file2, "velocity"); temperature = open_field(h5file2, "temperature"); /* Iterate over caps */ for(cap = 0; cap < caps; cap++) { int px, py, pz; int nno = nodex * nodey * nodez; /* Read data from HDF5 file. */ read_field(h5file2, velocity, cap); read_field(h5file2, temperature, cap); for (py = 0; py < nprocy; py++) for (px = 0; px < nprocx; px++) for (pz = 0; pz < nprocz; pz++) { int rank = pz + px*nprocz + py*nprocz*nprocx + cap*nprocz*nprocx*nprocy; int lx = (nodex - 1) / nprocx + 1; int ly = (nodey - 1) / nprocy + 1; int lz = (nodez - 1) / nprocz + 1; int sx = px * (lx - 1); int sy = py * (ly - 1); int sz = pz * (lz - 1); char filename[100]; FILE *file; int i, j, k; snprintf(filename, 99, "%s.velo.%d.%d", prefix, rank, step); fprintf(stderr, "Writing %s\n", filename); file = fopen(filename, "w"); fprintf(file, "%d %d %.5e\n", step, nno, time); fprintf(file, "%3d %7d\n", 1, nno); /* Traverse data in Citcom order */ for(j = sy; j < sy+ly; j++) for(i = sx; i < sx+lx; i++) for(k = sz; k < sz+lz; k++) { int n = k + j*nodez + i*nodez*nodey; fprintf(file, "%.6e %.6e %.6e %.6e\n", velocity->data[3*n+0], velocity->data[3*n+1], velocity->data[3*n+2], temperature->data[n]); } fclose(file); } } status = close_field(velocity); status = close_field(temperature); status = H5Fclose(h5file2); return 0; }