Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

  • ce51085
  • /
  • man
  • /
  • plot-methods.Rd
Raw File Download

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
  • directory
content badge
swh:1:cnt:0127c2c59b89281558ca8aaef28025af0d18e79c
directory badge
swh:1:dir:d3a2ca8411bc751cafa5a03a1d1ab8849a18fba2

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
  • directory
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
plot-methods.Rd
\name{plot-methods}
\docType{methods}
\alias{plot-methods}
\alias{plot,stpm2-method}
\alias{plot,pstpm2-method}
\title{ plots for an stpm2 fit}
\description{
Given an \code{stpm2} fit, return a plot
}
\section{Methods}{
\describe{
\item{x = "stpm2", y = "missing"}{an \code{stpm2} fit}
}}

\usage{

    \S4method{plot}{stpm2}(x,y,newdata,type="surv",
                      xlab="Time",line.col=1,ci.col="grey",
                      add=FALSE,ci=TRUE,rug=TRUE,
                      var=NULL,exposed=NULL,times=NULL,...)
    \S4method{plot}{pstpm2}(x,y,newdata,type="surv",
                      xlab="Time",line.col=1,ci.col="grey",
                      add=FALSE,ci=TRUE,rug=TRUE,
                      var=NULL,exposed=NULL,times=NULL,...)
}
\arguments{
  \item{x}{an \code{stpm2} object}
  \item{y}{not used (for generic compatibility)}
  \item{newdata}{required list of new data. This defines the unexposed
               newdata (\emph{excluding} the event times).}
  \item{type}{specify the type of prediction
  }
  \item{xlab}{x-axis label}
  \item{line.col}{line colour}
  \item{ci.col}{confidence interval colour}
  \item{ci}{whether to plot the confidence interval band (default=TRUE)}
  \item{add}{whether to add to the current plot (\code{add=TRUE}) or make a new
                      plot (\code{add=FALSE}) (default=FALSE)}
  \item{rug}{whether to add a rug plot of the event times to the current
                      plot (default=TRUE)}
  \item{var}{specify the variable name or names for the
    exposed/unexposed (names are given as characters)}
  \item{exposed}{function that takes newdata and returns the exposed
    dataset. By default, this increments \code{var}  (except for cure
    models, where it defaults to the last event time).}
  \item{times}{specifies the times. By default, this uses a span of the
                      observed times.}
  \item{\dots}{additional arguments (add to the \code{plot} command)}
}

%% \examples{


%%   }
\seealso{\code{\link{stpm2}}}
\keyword{methods}
%%\keyword{ ~~ other possible keyword(s)}


back to top

Software Heritage — Copyright (C) 2015–2026, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API