https://github.com/vsbuffalo/paradox_variation
Tip revision: 8fa6b5834f6536319b1e5cd9722ca02d317183df authored by Vince Buffalo on 12 August 2021, 01:04:21 UTC
updated ms
updated ms
Tip revision: 8fa6b58
corbett_detig_2015_updated.tsv
species abbrv kingdom size range pred_pi obs_pi impact_of_sel log10_size log10_range neut_model_conf num_chr map_length totalMb_covered ave_rec genome_species assembly_size genome_size selfing self_est
Anopheles gambiae agam Animalia 0.0029200000000000003 12617174.6041706 0.0336432942606259 0.0301483021842445 0.103883765047103 -2.53461714855158 7.10096211313345 low 2 1.661 38 0.8365315430007131 Anopheles gambiae 265011681 0.27 FALSE "NA"
Apis mellifera amel Animalia 0.015 6879080.97149576 0.00667240760626176 0.0062249314872774904 0.06706366657881249 -1.82390874094432 6.83753042142327 med NA 41.145 NA NA NA NA NA NA NA
Arabidopsis thaliana atha Plantae 0.135 12101555.7554881 0.009170871824296151 0.0031516300409689703 0.656343464247375 -0.8696662315049941 7.08284120606779 low 5 4.225 666 3.6030927822742997 Arabidopsis thaliana 119146348 0.16 TRUE 0.98999999999999999
Brachypodium distachyon bdis Plantae 0.15 8677559.9906804 0.00438024895998407 0.00267070036637202 0.390285714175084 -0.8239087409443191 6.93839762476712 low 5 15.98 556 6.01348055256947 Brachypodium distachyon 271923306 0.36 TRUE 0.98999999999999999
Bombyx mandarina bmor Animalia 0.04 1514636.62684628 0.0292143025612997 0.0276330106765374 0.0541273193650375 -1.39794000867204 6.18030845469703 low NA 14.13 NA NA NA NA NA NA NA
Bos taurus btau Animalia 1.5 377800 0.0011739944108647901 0.0012129503490739102 0 0.17609125905568102 5.57726195358581 med 29 30.97366 5499 1.26304440926021 Bos taurus 2670405961 3.65 FALSE "NA"
Caenorhabditis briggsae cbri Animalia 0.0011500000000000002 63860678.8303404 0.0033467428120063504 0.00154559564878465 0.5381791384626671 -2.93930215964639 7.80523353071931 low 5 4.844527 166 6.13822501209931 Caenorhabditis briggsae 108384165 0.12 TRUE 0.98999999999999999
Citrus reticulata ccle Plantae 5 331210 0.0146227141257328 0.0149627214561754 0 0.6989700043360191 5.52010344067098 high NA NA NA NA NA NA NA NA NA
Caenorhabditis elegans cele Animalia 0.0011500000000000002 76896886.30501 0.00542422516398884 0.0020995351326019503 0.612933632154384 -2.93930215964639 7.88590875478284 low 5 2.3328700000000002 5220 2.83413845735893 Caenorhabditis elegans 100272607 0.1 TRUE 0.98999999999999999
Citrullus lanatus clan Plantae 3 2681693.15254671 0.00396221300636048 0.0024109746659941 0.39150806326570603 0.47712125471966205 6.42840908306831 med NA NA NA NA NA NA NA NA NA
Canis lupus clup Animalia 1.06 47713282.6340329 0.0018840243073340102 0.0014913104212410302 0.208444171640593 0.0253058652647703 7.67863929668478 low 38 20.848000000000003 3065 0.9703849213551551 Canis lupus familiaris 2410960148 2.81 FALSE "NA"
Capsella rubella crub Plantae 0.577 2729825.65179217 0.0121510173660116 0.0032660636866693703 0.731210680695339 -0.238824186844269 6.43613491045375 low 8 3.8182633647 877 3.21595887311511 Capsella rubella 134835427 0.22 TRUE 1-0.7 (maximum likelihood at 1)
Cucumis sativus csat Plantae 2 317094.851731686 0.0138583574534025 0.0132098956743494 0.0467921094713781 0.30102999566398103 5.50118919099375 med NA NA NA NA NA NA NA NA NA
Cynoglossus semilaevis csem Animalia 0.5710000000000001 1130000 0.00709880645826389 0.00640178383438718 0.09818870650647049 -0.24336389175415202 6.05307844348342 low 21 16.204 352 4.25500500215174 Cynoglossus semilaevis 470182763 0.62 FALSE "NA"
Drosophila melanogaster dmel Animalia 0.0015400000000000001 16862937.5798404 0.0130820548394477 0.008718015469868771 0.333589747416406 -2.81247927916354 7.22693323242314 low 4 1.0546084999999998 969 1.09452095074309 Drosophila melanogaster 139465864 0.18 FALSE "NA"
Drosophila pseudoobscura dpse Animalia 0.002 4081202.67337432 0.0120686502571749 0.008720102115547511 0.27745837937731704 -2.69897000433602 6.61078816246318 low 1 NA 141 1.7769789685747601 Drosophila pseudoobscura 152696384 0.16333333333333336 FALSE "NA"
Danio rerio drer Animalia 0.025 802235.283701715 0.0102324679026468 0.009173960860790491 0.10344591861192301 -1.6020599913279598 5.90430175909162 low 25 21.773629999999997 1706 1.6137816789211001 Danio rerio 1412448247 1.7525 FALSE "NA"
Equus ferus przewalskii ecab Animalia 1.36 13413718.5652858 0.0035413912065319704 0.0036260777468777403 0 0.133538908370218 7.12754919011962 med NA 20 NA NA NA NA NA NA NA
Ficedula albicollis falb Animalia 0.1275 1292065.48887463 0.00392346779679009 0.0038009968899166803 0.0312149642144656 -0.894489815230026 6.11128452661269 low 32 31.320610000000002 3996 3.24065054958299 Ficedula albicollis 1118326800 1.3044444444444445 FALSE "NA"
Gasterosteus aculeatus gacu Animalia 0.05 10932006.6629691 0.0054592403680432606 0.00440938183871307 0.192308537186921 -1.30102999566398 7.03869988771966 low 21 12.511609277 1872 3.1137123613754 Gasterosteus aculeatus 463349471 0.64 FALSE "NA"
Gallus gallus ggal Animalia 0.7 4150243 0.0053287387671501 0.00588359552053694 0 -0.15490195998574302 6.61807352574089 low 28 28.676 8349 3.1486092544282 Gallus gallus 1046915324 1.25 FALSE "NA"
Glycine soja gmax Plantae 0.9144 746662.351431524 0.0031741038842944104 0.00273673479730597 0.137792933984473 -0.0388637826127747 5.87312425367491 med NA NA NA NA NA NA NA NA NA
Gossypium raimondii grai Plantae 1.5 2465.14126980311 1.1717358483627801e-4 1.17471716213813e-4 0 0.17609125905568102 3.39184181243189 med 13 14.933 433 2.04971450838414 Gossypium raimondii 761407154 0.9 TRUE 0.97999999999999998
Heliconius melpomene hmel Animalia 0.02 1407075.25916673 0.0223290821457228 0.0185141113935412 0.17085210790504302 -1.69897000433602 6.1483173268354 low NA NA NA NA NA NA NA NA NA
Homo sapiens hsap Animalia 1.65 20232960 0.0011497159762656902 0.00103745770978471 0.0976399987461233 0.21748394421390602 7.30605942294032 low 22 31.799563005 276215 1.19071999919365 Homo sapiens 3101788170 3.5 FALSE "NA"
Lepisosteus oculatus locu Animalia 0.46 2139592.88727786 0.00620792829600042 0.00618401913705004 0.00385139096496712 -0.337242168318426 6.33033114548531 low 29 29.23736 2820 3.33036154499458 Lepisosteus oculatus 945861706 1.4 FALSE "NA"
Meleagris gallopavo mgal Animalia 1.125 1036227.7120108 0.00234774905322667 0.0023715410864986303 0 0.0511525224473813 6.01545520251628 med 27 21.579 471 2.49300152121962 Meleagris gallopavo 1061800384 1.4633333333333336 FALSE "NA"
Macaca mulatta mmul Animalia 0.54 3249193.41499522 0.00308649721375029 0.0028670640132188504 0.0710945726935599 -0.267606240177031 6.51177556439669 low 20 24.739 274 1.08485593381464 Macaca mulatta 3097370727 3.365 FALSE "NA"
Mus musculus castaneus mmus Animalia 0.22 8117236.66520893 0.00887919246171713 0.00809064978269882 0.0888079273445341 -0.657577319177794 6.90940820839114 low NA NA NA NA NA NA NA NA NA
Medicago truncatula mtru Plantae 0.17500000000000002 3078930.55984125 0.0146255075036719 0.005142683557407141 0.648375719193607 -0.756961951313706 6.48839989422381 low 8 5.567 540 2.10396640184481 Medicago truncatula 314353944 0.48 TRUE 0.98999999999999999
Ovis canadensis oari Animalia 1.57 3663243.29419028 0.0021159657305198803 0.0022177120351231402 0 0.19589965240923402 6.56386576327702 med NA NA NA NA NA NA NA NA NA
Oryzias latipes olat Animalia 0.021 167142.302866677 0.0034100047404882904 0.00304076176792202 0.108282246115997 -1.67778070526608 5.22308638152985 med 24 14.269300000000001 2142 1.99525742496878 Oryzias latipes 869801494 1.08 FALSE "NA"
Oryza rufipogon osat Plantae 2 6266176.79906236 0.007519347326813421 0.0063571625441817305 0.15455926320725 0.30102999566398103 6.79700264426001 med NA NA NA NA NA NA NA NA NA
Papio anubis panu Animalia 1.05 5592032.86229625 0.0018133073632536501 0.0018918139038842999 0 0.0211892990699381 6.74756971493219 med 21 24.221 242 1.09724002836305 Papio anubis 2948380710 3.53 FALSE "NA"
Prunus davidiana pper Plantae 6.09 2063521.77352481 0.0154924934758873 0.009883405130760472 0.362052006273676 0.784617292632875 6.31460905575368 med NA NA NA NA NA NA NA NA NA
Populus trichocarpa ptri Plantae 30.48 2863675.20864497 0.0032555867753409503 0.0031675811212271998 0.0270321942515365 1.48401496266756 6.4569237597629 med 19 28.015 411 7.83638001056187 Populus trichocarpa 434136308 0.49 FALSE "NA"
Sorghum bicolor sbic Plantae 1.22 11859594.8472785 0.00294778312420537 0.0024874113876036403 0.156175579139945 0.0863598306747482 7.0740698527216 med NA NA NA NA NA NA NA NA NA
Setaria italica sita Plantae 1.52 5669493.05447552 0.006156649515667831 0.0023274067278458103 0.6219686175211241 0.181843587944773 6.75354422759013 low 9 14.15923 983 3.57138673723277 Setaria italica 405737677 0.53 TRUE 0.95999999999999996
Sus scrofa sscr Animalia 1.35 22703604.7216943 0.00464866163635456 0.00440820881243972 0.0517251722591282 0.130333768495006 7.35609481694879 low 18 16.038745458277003 2365 0.6687844788035141 Sus scrofa 2808509378 2.81 FALSE "NA"
Zea mays zmay Plantae 2.44 90898.7252503948 0.0142586699472965 0.0138592450874925 0.028012771266911398 0.38738982633872904 4.95855779278631 high NA NA NA NA NA NA NA NA NA