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Permalinks

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

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swh:1:cnt:09ea198bfbd1e83960d8537aba4278c60ef028d6
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swh:1:dir:929497b93713065ea15cca1ef7b895ff8310556c
Citations

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

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Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
NEWS
CHANGES IN VERSION 0.99.34
* Detecting conditions and replicates in GEO data

CHANGES IN VERSION 0.99.28
* Submit to Enrichr tool
* Changing shapes in PCA plot
* Better support for OS X and Windows

CHANGES IN VERSION 0.99.24
* Shiny GAM tool added
* PCA plot: pretty labels, auto-redraw
* Bug fixes

CHANGES IN VERSION 0.99.23
* Added options "Maximum Mean Probe" and "Maximum Median Probe" to Collapse Tool
* Fixed a bug emerging when one applies R-based function after collapsing by columns

CHANGES IN VERSION 0.99.22
* Fixed AdjustTool
* Removed obsolete output produced by servePhantasus
* Updated tutorial

CHANGES IN VERSION 0.99.21
* Merged changes from morpheus.js repository
* Added function `reparseCachedESs` for updating downloaded GEO-datasets, which are saved in cache

CHANGES IN VERSION 0.99.20
* A bit better code coverage with tests

CHANGES IN VERSION 0.99.19
* Safer procedure for phenoData parsing
* Even sample-empty datasets deserve to have displayed meta

CHANGES IN VERSION 0.99.18
* New phenoData parsing strategy for GEO Series

CHANGES IN VERSION 0.99.17
* Fixed issue with null featureData for GSE37270

CHANGES IN VERSION 0.99.16
* Fixed issue with incorrect perfomance of LimmaTool when columns are passed as args

CHANGES IN VERSION 0.99.15
* Updated tutorial

CHANGES IN VERSION 0.99.14
* Correct error messages when dataset is not present in GEO

CHANGES IN VERSTION 0.99.13
* Added possibility to load datasets from preloaded rda-files in specialized directory on server
* servePhantasus now opens browser with web-application automatically on start-up
* Added tutorial on main site
* Updated biocViews
* Updated tutorial and mans according to changes
* Added experimental support for loading RNA-seq dataset from GEO

CHANGES IN VERSION 0.99.12
* Added possibility to load GEO-dataset by specifying its id in link parameters

Software Heritage — Copyright (C) 2015–2025, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Contact— JavaScript license information— Web API

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