Package: mousegwas
Type: Package
Title: Run in-bred mouse GWAS
Version: 0.1.0
Author@R: c(person("Asaf", "Peer", email = "asaf.peer@jax.org", role = c("aut", "cre")),
            person("The Jackson Laboratory", role=c("cph")))
Description: With the availability of a lot of in-bred mice strains genotypes, Genome Wide Association Studies can 
             easily be conducted when strains are being phenotyped. This package pre-process the phenotypic data,
             run GEMMA or pyLMM and produce publication-ready figures of the results.
License: GPL-3
Encoding: UTF-8
LazyData: true
BiocViews:
Imports:
  R.utils,
  data.table (>= 1.12.2),
  readr,
  dplyr,
  tidyr,
  tibble,
  yaml,
  argparse,
  magrittr,
  stringr,
  ggrepel,
  ggplot2,
  fastmatch,
  gtools,
  biomaRt (>= 2.34.1),
  fuzzyjoin,
  GGally,
  corrgram,
  ggnewscale,
  enrichR,
  goseq,
  GO.db,
  org.Mm.eg.db,
  AnnotationDbi,
  cowplot,
  reshape,
  gtable,
  grid,
  rlang (>= 0.4.7)
URL: https://github.com/TheJacksonLaboratory/mousegwas
BugReports: https://github.com/TheJacksonLaboratory/mousegwas/issues
RoxygenNote: 7.0.2
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr