# Wellcome to the cng-hippocampus project!

![alt text](https://github.com/CNG-LAB/cngopen/blob/main/hippocampus/image.png)

# 3D plots for the heritability results:

[G1-FC-heritability for SUB](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_G1_FC_LSUB.html)

[G1-FC-heritability for CA](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_G1_FC_LCA.html)

[G1-FC-heritability for DG](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_G1_FC_LDG.html)

[G2-FC-heritability for SUB](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_G2_FC_LSUB.html)

[G2-FC-heritability for CA](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_G2_FC_LCA.html)

[G2-FC-heritability for DG](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_G2_FC_LDG.html)

[T1w/T2w-heritability for SUB](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_T1wT2w_LSUB.html)

[T1w/T2w-heritability for CA](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_T1wT2w_LCA.html)

[T1w/T2w-heritability for DG](http://akne.unxz.net/~sheyma/hippocampus_figures/herit_T1wT2w_LDG.html)

### Introduction for the repo
----------

`hippocampus/scripts/*.py`          ->  computing individual- and group-level measures 

`hippocampus/scripts/*.ipynb`       ->  visualizing results for hippocampal subfields and cortex

`hippocampus/scripts/plot_funcs.py` ->  in-house plotting for subfield surfaces and spider plots

`hippocampus/solar`                 ->  heritability and genetic correlation results from [SOLAR](http://www.solar-eclipse-genetics.org/)

`hippocampus/data`                  ->  group-level data used to report results

### Dependencies
----------

`Python 3.7` 

[BrainSpace](https://github.com/MICA-MNI/BrainSpace)

[BrainStat](https://github.com/MICA-MNI/BrainStat)

our conda environment `hippoc`

### Contributors
----------
- Şeyma Bayrak - Max Planck Institute for Human Cognitive and Brain Sciences
- Sofie Valk - Max Planck Institute for Human Cognitive and Brain Sciences