https://github.com/pmelsted/pizzly
Tip revision: 8617a24a7fc353a99121431d92c6fd64439fcd71 authored by Pall Melsted on 12 September 2017, 11:10:57 UTC
Merge pull request #14 from bgruening/patch-1
Merge pull request #14 from bgruening/patch-1
Tip revision: 8617a24
common.h
#ifndef COMMON_H
#define COMMON_H
#include <string>
#define PIZZLY_VERSION "0.37.3"
struct ProgramOptions {
std::string gtf;
std::string cache;
std::string fusionFile;
std::string fasta;
std::string outprefix;
bool ignoreProtein;
int k;
int alignScore;
int insertSize;
int kmerScore;
ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {}
};
#endif // COMMON_H