bin_PROGRAMS = ntcard nthll ntcard_CPPFLAGS = -I$(top_srcdir)/Common ntcard_SOURCES = \ Common/Uncompress.cpp \ Common/Uncompress.h \ Common/SignalHandler.cpp \ Common/SignalHandler.h \ Common/StringUtil.h \ Common/Fcontrol.cpp \ Common/Fcontrol.h \ ntcard.cpp nthll_CPPFLAGS = -I$(top_srcdir)/Common nthll_SOURCES = \ Common/Uncompress.cpp \ Common/Uncompress.h \ Common/SignalHandler.cpp \ Common/SignalHandler.h \ Common/Fcontrol.cpp \ Common/Fcontrol.h \ nthll.cpp dist_doc_DATA = \ ChangeLog \ CITATION.bib \ LICENSE \ README.md EXTRA_DIST= autogen.sh SUBDIRS = \ vendor \ data test-reads.fq.gz: wget https://www.bcgsc.ca/downloads/btl/ntcard/test-reads.fq.gz test-rna-reads.fq.gz: wget https://www.bcgsc.ca/downloads/btl/ntcard/test-rna-reads.fq.gz test_k12.hist: test-reads.fq.gz ./ntcard -k 12 -p test test-reads.fq.gz test-rna_k12.hist: test-rna-reads.fq.gz ./ntcard -k 12 -p test-rna test-rna-reads.fq.gz test-gap_k12.hist: test-reads.fq.gz ./ntcard -k 12 -p test-gap -g 2 test-reads.fq.gz test-rna-gap_k12.hist: test-rna-reads.fq.gz ./ntcard -k 12 -p test-rna-gap -g 2 test-rna-reads.fq.gz check-dna: test_k12.hist diff -q test_k12.hist $(srcdir)/data/test_k12.hist.good check-dna-gap: test-gap_k12.hist diff -q test-gap_k12.hist $(srcdir)/data/test-gap_k12.hist.good check-rna: test-rna_k12.hist diff -q test-rna_k12.hist $(srcdir)/data/test_k12.hist.good check-rna-gap: test-rna-gap_k12.hist diff -q test-rna-gap_k12.hist $(srcdir)/data/test-gap_k12.hist.good check: check-dna check-rna check-dna-gap check-rna-gap # Check the C++ source code for white-space errors with clang-format. clang-format: for i in ntcard.cpp; do clang-format -style=file $$i >$$i.fixed; done for i in ntcard.cpp; do diff -su $$i $$i.fixed && rm -f $$i.fixed; done if ls *.fixed; then exit 1; fi clean-local: rm test-reads.fq.gz rm test_k12.hist rm test-gap_k12.hist rm test-rna-reads.fq.gz rm test-rna_k12.hist rm test-rna-gap_k12.hist