# $Id: show.vgms.q,v 1.6 2008-12-15 14:27:29 edzer Exp $ "show.vgms" <- function(min = 1e-12 * max, max = 3, n = 50, sill = 1, range = 1, models = as.character(vgm()$short[c(1:17)]), nugget = 0, kappa.range = 0.5, plot = TRUE, ..., as.groups = FALSE) { zero.range.models = c("Nug", "Int", "Lin", "Err") # print(models) L = max(length(sill), length(range), length(nugget), length(models), length(kappa.range)) sill = rep(sill, length.out = L) range = rep(range, length.out = L) nugget = rep(nugget, length.out = L) i = 0 if (length(kappa.range) > 1) { # loop over kappa values for Matern model: if (missing(models)) models = "Mat" stopifnot(models == "Mat" || models == "Ste" || models == "Exc") data = matrix(NA, n * length(kappa.range), 2) v.level = rep("", n * length(kappa.range)) for (kappa in kappa.range) { v = vgm(sill[i+1], models, range[i+1], nugget = nugget[i+1], kappa = kappa) x = variogramLine(v, 0, 1, 0) data[(i*n+1), ] = as.matrix(x) x = variogramLine(v, max, n - 1, min) data[(i*n+2):((i+1)*n), ] = as.matrix(x) m.name = paste("vgm(", sill[i+1], ",\"", models, "\",", range, sep = "") if (nugget[i+1] > 0) m.name = paste(m.name, ",nugget=", nugget[i+1], sep = "") m.name = paste(m.name, ",kappa=", kappa, ")", sep = "") v.level[(i*n+1):((i+1)*n)] = rep(m.name, n) i = i + 1 } } else { models = rep(models, length.out = L) data = matrix(NA, n * length(models), 2) v.level = rep("", n * length(models)) for (m in models) { this.range = ifelse(!is.na(pmatch(m, zero.range.models)), 0, range[i+1]) v = vgm(sill[i+1], m, this.range, nugget = nugget[i+1], kappa = kappa.range) x = variogramLine(v, 0, 1, 0) data[(i*n+1), ] = as.matrix(x) x = variogramLine(v, max, n - 1, min) data[(i*n+2):((i+1)*n), ] = as.matrix(x) m.name = paste("vgm(", sill[i+1], ",\"", m, "\",", this.range, sep = "") if (nugget[i+1] > 0) m.name = paste(m.name, ",nugget=", nugget[i+1], sep = "") m.name = paste(m.name, ")", sep = "") v.level[(i*n+1):((i+1)*n)] = rep(m.name, n) i = i + 1 } } dframe = data.frame(semivariance = data[,2], distance = data[,1], model = factor(v.level, levels = unique(v.level))) vgm.panel = function(x,y, ...) { n = length(x) lpoints(x[1],y[1]) llines(x[2:n],y[2:n]) } vgm.panel2 = function(x, y, subscripts, groups, ...) { lpoints(0, 0, col = 1) panel.superpose(x, y, subscripts, groups, ...) } if (!plot) dframe else { if (as.groups) { model = 0 # avoid NOTE on cran check xyplot(semivariance ~ distance, groups = model, dframe[dframe$distance > 0,], panel = vgm.panel2, as.table = TRUE, auto.key = TRUE, type = 'l', ...) } else xyplot(semivariance ~ distance | model, dframe, panel = vgm.panel, as.table = TRUE, ...) } }