.tree = (rf122:0.0280919,(((usa:0.0151257,col:0.0127906):0.0132464,jkd:0.0439743):0.00532819,n315:0.0150894):0.0150894);
.target = usa
.blocks = 5000, 500, 100

*.circular = true

col.fasta = references/COL.fasta
jkd.fasta = references/JKD6008.fasta
rf122.fasta = references/RF122.fasta
n315.fasta = references/N315.fasta
usa.fasta = usa300_contigs.fasta