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<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2 20190208//EN" "JATS-archivearticle1.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="other">
  <front>
    <journal-meta>
      <journal-id/>
      <journal-title-group>
</journal-title-group>
      <issn/>
      <publisher>
        <publisher-name/>
      </publisher>
    </journal-meta>
    <article-meta>
      <title-group>
        <article-title>Perm.pub pilot project</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <contrib-id contrib-id-type="orcid">0000-0002-5014-4809</contrib-id>
          <name>
            <surname>Ellerman</surname>
            <given-names>E. Castedo</given-names>
          </name>
          <email>castedo@castedo.com</email>
        </contrib>
      </contrib-group>
      <pub-date date-type="eprint" publication-format="electronic" iso-8601-date="2022-08-09">
        <day>9</day>
        <month>8</month>
        <year>2022</year>
      </pub-date>
      <permissions>
        <copyright-statement>© 2022, Ellerman et al</copyright-statement>
        <copyright-year>2022</copyright-year>
        <copyright-holder>Ellerman et al</copyright-holder>
        <license license-type="open-access">
          <ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
          <license-p>This document is distributed under a Creative Commons
Attribution 4.0 International license.</license-p>
        </license>
      </permissions>
      <abstract>
        <p>This document describes a pilot project hosted at https://perm.pub/
and its motivation. This pilot project involves two technologies of
interest: one of them JATS, and the other a new technology leveraging
the Software Heritage archive. The formation of working groups may be
appropriate to share opinions and suggestions. Feedback is
encouraged.</p>
      </abstract>
    </article-meta>
  </front>
  <body>
    <sec id="objectives">
      <title>Objectives</title>
      <p>The perm.pub pilot project aims to demonstrate how the new
  technology of
  <ext-link ext-link-type="uri" xlink:href="https://perm.pub/ji2STto1mZ3i2BmnGxbkebejKH4/0.1">Digital
  Succession Identifiers (DSI)</ext-link> can enable an alternative to
  current preprint servers with the following combined improvements:</p>
      <list list-type="order">
        <list-item>
          <label>1)</label>
          <p>the benefits of articles in modern web page format,</p>
        </list-item>
        <list-item>
          <label>2)</label>
          <p>freedom for readers to choose different websites to access
      those documents, and</p>
        </list-item>
        <list-item>
          <label>3)</label>
          <p>facilities for readers to ascertain the distinct versions of a
      document (manuscript, preprint, article) as they have become
      available at distinct points in time.</p>
        </list-item>
      </list>
      <p>Notable benefits of a modern web page format are:</p>
      <list list-type="order">
        <list-item>
          <label>1)</label>
          <p>improved discovery of documents via Internet search
      engines,</p>
        </list-item>
        <list-item>
          <label>2)</label>
          <p>an improved reader experience for readers using popular
      electronic devices of the 21st century, such as computers and
      mobile phones, rather than physical paper, and</p>
        </list-item>
        <list-item>
          <label>3)</label>
          <p>the opportunity for innovative web site experiences that
      encourage researcher communication and collaboration, such as
      <ext-link ext-link-type="uri" xlink:href="manubot.org">Manubot</ext-link>
      <xref alt="1" rid="ref-himmelstein_open_2019" ref-type="bibr">1</xref>.</p>
        </list-item>
      </list>
    </sec>
    <sec id="digital-succession-identifiers">
      <title>Digital Succession Identifiers</title>
      <p>A digital succession contains multiple digital objects. In this
  application to perm.pub, the digital objects are directories with JATS
  XML files. Although a digital succession expands over time, each
  digital object within the succession does not change. A technical
  specification of Digital Succession Identifiers (DSIs) can be found in
  the
  <ext-link ext-link-type="uri" xlink:href="https://perm.pub/ji2STto1mZ3i2BmnGxbkebejKH4/0.1">Digital
  Succession Identifier Specification</ext-link>.</p>
      <p>The capabilities of JATS XML, DSIs and underlying technologies
  discussed in the
  <ext-link ext-link-type="uri" xlink:href="https://perm.pub/ji2STto1mZ3i2BmnGxbkebejKH4/0.1">Digital
  Succession Identifier Specification</ext-link>, enable a trisection of
  the role of a preprint server.</p>
    </sec>
    <sec id="preprint-servers-trisected">
      <title>Preprint servers trisected</title>
      <p>The
  <ext-link ext-link-type="uri" xlink:href="archive.softwareheritage.org">Software
  Heritage archive</ext-link>
  <xref alt="2" rid="ref-cosmo_referencing_2020" ref-type="bibr">2</xref>
  opens dramatic new possibilities in the preservation of written
  outputs by researchers. A possibility the perm.pub pilot project aims
  to demonstrate is a decentralized trisection of a preprint server into
  three separate entities:</p>
      <list list-type="order">
        <list-item>
          <label>1)</label>
          <p>the archiver (e.g. Software Heritage),</p>
        </list-item>
        <list-item>
          <label>2)</label>
          <p>the eprinter, and</p>
        </list-item>
        <list-item>
          <label>3)</label>
          <p>the locator.</p>
        </list-item>
      </list>
      <p>Today, the decentralized archiver is Software Heritage. Due to the
  use of intrinsic identifiers
  <xref alt="3" rid="ref-di_cosmo_2044_2022" ref-type="bibr">3</xref>,
  this archiver role can be performed by multiple independent
  parties.</p>
      <sec id="eprinter-role">
        <title>Eprinter role</title>
        <p>The eprinter is a website which generates webpages and
    potentially alternative PDFs based on JATS XML stored in an archive.
    It is mostly up to the eprinter, and the community it serves, to
    decide which documents are eprinted and how they are presented. The
    lifetime of an eprinter is potentially short. By rendering webpages
    and implementing novel technological enhancements for a certain
    audience, an eprinter might undermine it's ability to sustainable
    exist long-term. This is not of great concern to the extent that the
    research community does not depend on an eprinter for long-term
    preservation.</p>
      </sec>
      <sec id="locator-role">
        <title>Locator role</title>
        <p>https://perm.pub/ aims to demonstrate a locator which serves a
    similar role to a DOI registrar or the ID system managed by a
    preprint server. The mandatory minimal long-term mission of the
    perm.pub locator is to serve static pages which identify which JATS
    XML and PDF files in the Software Heritage archive correspond to a
    given identifier of those documents. An appropriate subset of DSI
    located by perm.pub can also exist under a DOI registrar
    namespace.</p>
      </sec>
    </sec>
    <sec id="references">
      <title>References</title>
    </sec>
  </body>
  <back>
    <ref-list>
      <ref id="ref-cosmo_referencing_2020">
        <element-citation publication-type="article-journal">
          <person-group person-group-type="author">
            <name>
              <surname>Cosmo</surname>
              <given-names>Roberto Di</given-names>
            </name>
            <name>
              <surname>Gruenpeter</surname>
              <given-names>Morane</given-names>
            </name>
            <name>
              <surname>Zacchiroli</surname>
              <given-names>Stefano</given-names>
            </name>
          </person-group>
          <article-title>Referencing Source Code Artifacts: A Separate Concern in Software Citation</article-title>
          <source>Computing in Science &amp; Engineering</source>
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          </date-in-citation>
          <volume>22</volume>
          <issue>2</issue>
          <issn>1521-9615, 1558-366X</issn>
          <uri>https://ieeexplore.ieee.org/document/8946737/</uri>
          <pub-id pub-id-type="doi">10.1109/MCSE.2019.2963148</pub-id>
          <fpage>33</fpage>
          <lpage>43</lpage>
        </element-citation>
      </ref>
      <ref id="ref-di_cosmo_2044_2022">
        <element-citation publication-type="article-journal">
          <person-group person-group-type="author">
            <name>
              <surname>Di Cosmo</surname>
              <given-names>Roberto</given-names>
            </name>
            <name>
              <surname>Gruenpeter</surname>
              <given-names>Morane</given-names>
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              <surname>Zacchiroli</surname>
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            </name>
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          </date-in-citation>
          <uri>https://osf.io/kde56/</uri>
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        </element-citation>
      </ref>
      <ref id="ref-himmelstein_open_2019">
        <element-citation publication-type="article-journal">
          <person-group person-group-type="author">
            <name>
              <surname>Himmelstein</surname>
              <given-names>Daniel S.</given-names>
            </name>
            <name>
              <surname>Rubinetti</surname>
              <given-names>Vincent</given-names>
            </name>
            <name>
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            </name>
            <name>
              <surname>Hu</surname>
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            </name>
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            </name>
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            </name>
          </person-group>
          <article-title>Open collaborative writing with Manubot</article-title>
          <source>PLOS Computational Biology</source>
          <person-group person-group-type="editor">
            <name>
              <surname>Schneidman-Duhovny</surname>
              <given-names>Dina</given-names>
            </name>
          </person-group>
          <year iso-8601-date="2019-06">2019</year>
          <month>06</month>
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            <month>09</month>
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          </date-in-citation>
          <volume>15</volume>
          <issue>6</issue>
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          <pub-id pub-id-type="doi">10.1371/journal.pcbi.1007128</pub-id>
          <fpage>e1007128</fpage>
          <lpage/>
        </element-citation>
      </ref>
    </ref-list>
  </back>
</article>
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