2011-02-23 Dirk Eddelbuettel * DESCRIPTION: Release 0.9.2 * inst/NEWS: Release 0.9.2 * inst/include/Rcpp/config.h: Release 0.9.2 * debian/*: Similarly updated for new release to Debian * inst/include/RcppCommon.h: Apply patch by Alexey Stukalov to enable basic Intel Compiler support without Cxx0x or TR1 features * inst/THANKS: Added some Thank You! to Baptiste, Alexey and Ken * inst/include/Rcpp/Module.h: Minor reworking of module loading macro to get rid of one g++ warning 2011-02-22 Dirk Eddelbuettel * inst/unitTests/runit.Module.client.package.R: Add a test for OS X 10.5.* or older and do not execute the test here as g++ 4.2.1 balks at some of the Rcpp modules code. Thanks to Simon Urbankek for pinning this down and Baptiste Auguie for additonal testing. 2011-02-20 Dirk Eddelbuettel * inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw: Added RcppArmadillo example 2011-02-19 Dirk Eddelbuettel * inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw: Added three more setup-related questions in the first section following another rcpp-devel question 2011-02-14 Dirk Eddelbuettel * DESCRIPTION: Release 0.9.1 * inst/NEWS: Release 0.9.1 * inst/include/Rcpp/config.h: Release 0.9.1 * debian/*: Similarly updated for new release to Debian 2011-02-13 Dirk Eddelbuettel * inst/include/Rcpp/Module.h: Cache return of Rf_install("Module") in a static helper function used by the LOAD_RCPP_MODULE macro 2011-02-11 Dirk Eddelbuettel * inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw: Added two more examples 2011-02-10 Douglas Bates * inst/include/Rcpp/XPtr.h: Replace calls to EXTPTR_PTR with R_ExternalPtrAddr. The distinction is important when R is compiled with PROTECTCHECK enabled. 2011-02-01 Romain Francois * inst/include/Rcpp/vector/Vector.h: extra PROTECT'ion in several places 2011-01-25 Dirk Eddelbuettel * inst/include/Rcpp/DataFrame_generated.h: Assign Rf_install() result to local SEXP (by modifying generator script creating the file) * inst/include/Rcpp/DataFrame.h: Assign Rf_install() result to local SEXP * inst/include/Rcpp/DottedPair.h: idem * inst/include/Rcpp/grow.h: idem * inst/include/Rcpp/Module.h: idem * inst/include/Rcpp/vector/eval_methods.h: idem * inst/include/Rcpp/vector/Vector.h: idem 2011-01-25 Douglas Bates * src/exceptions.cpp: Assign Rf_install() result to local SEXP * src/Evaluator.cpp: idem * src/Reference.cpp: idem * src/S4.cpp: idem * inst/include/Rcpp/Date.h: Use predefined symbol. 2011-01-22 Dirk Eddelbuettel * src/cache.cpp: Assign Rf_install() result to local SEXP * src/Environment.cpp: idem * src/Evaluator.cpp: idem * src/Function.cpp: idem * src/Function.cpp: idem * src/RObject.cpp: idem * src/Symbol.cpp: idem * inst/doc/Rcpp.bib: Added SoDA (some time ago) 2011-01-13 Douglas Bates * src/Reference.cpp: Protect the value being set in Reference::FieldProxy::set 2011-01-11 Romain Francois * inst/include/Rcpp/vector/string_proxy.h: fix implicit conversion to int, reported by Daniel Sabanes Bove on Rcpp-devel * inst/unitTests/runit.vector.R: unit test for the above fix 2011-01-08 Dirk Eddelbuettel * inst/doc/Rcpp.bib: Updated a number of CRAN versions 2011-01-07 Dirk Eddelbuettel * inst/include/Rcpp/config.h (RCPP_VERSION): Set to 0.9.0, at last. 2011-01-06 Douglas Bates * R/zzz.R (.onLoad): Don't call init_Rcpp_cache here. * src/Rcpp_init.c: Don't register init_Rcpp_cache. It should only be called once and it is called in the C function R_init_Rcpp. * NAMESPACE: Use registered symbols instead of relisting them. Registration allows for checking the number of arguments. 2011-01-04 Dirk Eddelbuettel * src/debugging.cpp: Treat the *BSD flavours like Windows and offer file and line number but not stack trace (for lack of execinfo) * src/Makevars: Replace implicit variable $^ with explicit list 2011-01-02 Dirk Eddelbuettel * inst/doc/Rcpp-quickref/Rcpp-quickref.Rnw: Applied patch with additional documentation by Christian Gunning 2010-12-23 Romain Francois * inst/include/Rcpp/RObject.h: New internal class SEXPstack to handle garbage collection. Presumably more efficient than R_PreserveObject and R_ReleaseObject * inst/include/Rcpp/sugar/operators/times.h: More efficient operator* for REALSXP sugar expressions, avoiding unnecessary NA tests. * inst/include/Rcpp/sugar/operators/divides.h: More efficient operator/ for REALSXP sugar expressions, avoiding unnecessary NA tests. * inst/include/Rcpp/sugar/operators/minus.h: More efficient operator- for REALSXP sugar expressions, avoiding unnecessary NA tests. 2010-12-22 Romain Francois * inst/include/Rcpp/sugar/operators/plus.h: More efficient operator+ for REALSXP sugar expressions, avoiding unnecessary NA tests. 2010-12-22 Dirk Eddelbuettel * inst/unitTests/runit.Vector.R: Applied patch by Christian Gunning to add more tests for complex-typed vectors 2010-12-20 Dirk Eddelbuettel * R/inline.R (Rcpp.plugin.maker): Reverse order in PKG_LIBS 2010-12-19 Dirk Eddelbuettel * DESCRIPTION: Release 0.9.0 * debian/*: Similarly updated for new release to Debian 2010-12-18 Dirk Eddelbuettel * inst/announce/ANNOUNCE-0.9.0.txt: Started announcement post * inst/unitTests/runit.Date.R: Added new unit tests for date and datetime from string 2010-12-17 Dirk Eddelbuettel * inst/include/Rcpp/Datetime.h: correct default format to use %OS for fractional seconds and not the popular typo %OS (i.e. ooh, not zero) * src/Datetime.cpp: add missing as.POSIXct() after strptime for constructor from string as we then use the constructor from double * src/Date.cpp: add missing as.Date() after strptime for constructor from string as we then use the constructor from int 2010-12-13 Romain Francois * inst/include/Rcpp/vector/string_proxy.h: List::Proxy did not convert bool correctly, reported on Rcpp-devel by Daniel Sabanés Bové 2010-12-12 Romain Francois * R/SHLIB.R: new unexported R function SHLIB, small wrapper around R CMD SHLIB * inst/include/Rcpp/sprintf.h: returning a std::string to avoid leaks 2010-12-10 Dirk Eddelbuettel * inst/include/Rcpp/sprintf.h: Use vsnprintf() instead 2010-12-10 Romain Francois * inst/include/Rcpp/barrier.h: faster versions (crossing the write barrier) for string_elt, etc ...(to be used only internally) * src/barrier.cpp: implementation of the above 2010-12-09 John M Chambers * src/Module.cpp: Rcpp/src/exceptions.cpp, Rcpp/src/Rcpp_init.c, etc. add a not_initialized exception and a dummy_pointer to identify such objects, throw exc. back to R 2010-12-07 Romain Francois * inst/include/Rcpp/vector/matrix.h: Matrix gains a nested ::Sub typedef 2010-12-05 Romain Francois * inst/include/Rcpp/module/Module_generated_class_constructor.h: the default constructor was always considered valid because of the use of &yes instead of &yes_arity<0> * R/Rcpp.package.skeleton.R: Rcpp.package.skeleton( "foo", example_code = FALSE) did not work properly. Rcpp.package.skeleton gains some arguments 2010-12-05 Dirk Eddelbuettel * src/Date.cpp: Add 1900 to tm.year after mktime00() call as we now no longer assume the field is '1900-less' * src/Date.cpp: Define new static const variable baseYear as 1900 and use throughout * inst/unitTests/runit.Date.R (test.Date.getFunctions): Added unit tests for the get* functions of the Date class * R/bib.R (bib): Correct expression for default Rcpp bibtex file 2010-12-04 Dirk Eddelbuettel * inst/include/Rcpp/Date.h: Remove addition of 1900 in getYear() 2010-12-04 Romain Francois * inst/doc/Rcpp-quickref/Rcpp-quickref.Rnw: documentation patch by Christian Gunnning * inst/include/Rcpp/vector/matrix.h: fix SubMatrix. Bug reported by Christian Gunnning on Rcpp-devel * inst/include/Rcpp/vector/SubMatrix.h: factored out of matrix.h * inst/include/Rcpp/sprintf.h: new sprintf template to format strings 2010-12-03 Dirk Eddelbuettel * inst/unitTests/runit.RObject.R: fix 'inherits' test added today * inst/include/Rcpp/module/Module_generated_Constructor.h: Applied patch by Tama Ma for up to seven args in ctor * inst/include/Rcpp/module/Module_generated_class_constructor.h: Idem * inst/include/Rcpp/module/Module_generated_ctor_signature.h: Idem 2010-12-03 Romain Francois * inst/include/Rcpp/RObject.h : new inline method inherits that checks if an object inherits from a given class (wrapper around Rf_inherits) * inst/unitTests/runit.RObject.R: unit test for the above 2010-12-02 Douglas Bates * inst/include/Rcpp/generated/Function__operator.h, inst/include/Rcpp/Function.h: operator() becomes const. 2010-11-29 Romain Francois * inst/include/Rcpp/vector/Vector.h: trying to please suncc after CRAN checks * R/Module.R: protect the module$refClassGenerators <- generators line against the case where there are no classes (triggered a problem with the parser package) 2010-11-27 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.9 * debian/*: Similarly updated for new release to Debian 2010-11-26 Romain Francois * inst/include/Rcpp/vector/Vector.h: List::create( _["foo"] ) sets the SEXP to R_MissingArg, usueful for formal arguments specifications, simpler form than List::create( _["foo"] = R_MissingArg ) * inst/include/Rcpp/macros/unroll.h: helper macro RCPP_UNROLL_LOOP * inst/include/Rcpp/vector/MatrixColumn.h: added MatrixColumn::operator=( MatrixColumn& ) otherwise it gets synthetized by the compiler * inst/include/Rcpp/vector/MatrixRow.h: same for MatrixRow * inst/include/Rcpp/vector/Matrix.h: added Matrix( SubMatrix ) and Matrix::operator=( SubMatrix ) 2010-11-25 Romain Francois * inst/include/Rcpp/module/Module_generated_function.h: new .function with formal argument specification * inst/include/Rcpp/module/Module_generated_CppFunction.h: helper classes for the above * R/Module.R: using the formal argument specification if available * R/populate.R: new R function populate to dump the contents of a module into an environment or a namespace * man/populate.Rd: documentation for populate 2010-11-24 Romain Francois * R/00_classes.R: formals<- method for C++Function that allows to set default arguments, etc .. to a C++ function 2010-11-23 Dirk Eddelbuettel * inst/doc/Makefile: Call Rscript with --vanilla to skip user settings 2010-11-23 Romain Francois * R/00_classes.R: C++Class gains a docstring slot to host self documentation * R/Module.R: calling an exposed C++ more efficiently by using the xp directly rather than traversing the map internally * R/00_classes.R: C++Function gains a docstring slot to host self documentation of the internal function. And a "signature" slot to host the C++ signature of the function * R/01_show.R: updated show( C++Function ) to display the docstring and the signature. updated show( C++Class ) to display the docstring. * inst/include/Rcpp/module/Module_generated_CppFunction.h: self documentation for exposed C++ functions and extraction of the signature * inst/include/Rcpp/module/Module_generated_function.h: idem 2010-11-22 Romain Francois * R/00_classes.R: C++OverloadedMethods gains an "info" class methods, factored out from Module.R * R/01_show.R: more information printed in show( C++Class ) * inst/include/Rcpp/Module/Module_generated_get_signature.h: templates to grab method signatures * inst/include/Rcpp/Module.h: CppMethod gains a signature method that returns the signature of the method. * R/00_classes.R: C++OverloadedMethods gains a "signatures" field that contains the signature of each overload * R/Module.R: registered method gain an automatically generated self description that contains the method(s) signature(s) and the docstring that is declared in .method * inst/include/Rcpp/Module/Module_generated_CppMethod.h: implement signature * inst/include/Rcpp/Module/Module_generated_Pointer_CppMethod.h: idem 2010-11-21 Romain Francois * R/Module.R: internal version of cpp_hasDefaultConstructor * src/Module.cpp: implementation (Class__has_default_constructor) * inst/include/Rcpp/Module.h: support (class_.has_default_constructor) * inst/include/Rcpp/module/Module_generated_class_constructor.h: new interface for exposing constructors, the init_ disappears and the template arguments are directly applied to the .constructor function * inst/include/Rcpp/module/Module_generated_Constructor.h: removed init_* * inst/include/Rcpp/module/Module_generated_method.h: .method gains a docstring argument to allow self documentation of exposed methods * inst/include/Rcpp/module/Module_generated_PointerMethod.h: idem * R/Module.R: grab method docstrings 2010-11-20 John M Chambers * R/Module.R: now checks for the existence of a default constructor for a C++ class and generates a suitable $initialize() method accordingly. 2010-11-20 Romain Francois * inst/include/Rcpp/vector/MatrixRow.h: added missing return *this ; * R/Module.R: dispatch based on void-ness of the methods. For example if all methods are known to be void, etc ... * R/00_classes.R: more information in the C++OverloadedMethods ref class * src/Module.cpp: new .External CppMethod__invoke_void and CppMethod__invoke_notvoid that are used when we know for sure that all overloaded methods are void, or not void * inst/include/Rcpp/Module.h: class_ gains invoke_void and invoke_notvoid to support the changes above 2010-11-18 Douglas Bates * inst/include/Rcpp/module/Module_generated_[class_]Constructor.h: allow up to 6 arguments to .constructor 2010-11-18 Romain Francois * inst/include/Rcpp/Module.h: rework the class_ template to allow overloaded methods * R/00_classes.R: The C++Method class disappears and the C++OverloadedMethods enters. a "C++OverloadedMethods" object points to a set of overloaded C++ methods that all share the same name. * R/Module.R: adapt some of the code to cope with changes above 2010-11-17 Romain Francois * inst/include/Rcpp/sugar/as_vector.h: added the as_vector function that turns a sugar matrix expression into a vector of the appropriate type * inst/include/Rcpp/vector/Matrix.h: new SubMatrix class 2010-11-13 Romain Francois * inst/include/Rcpp/Module.h: expose constructors as the "cpp_constructor" field of "C++ClassRepresentation" and the "constructors" slot of "C++Class" 2010-11-07 Romain Francois * inst/include/Rcpp/sugar/operators/minus.h: fixed Minus_Vector_Primitive * inst/unitTests/runit.sugar.R: new test for the above 2010-11-05 Romain Francois * inst/include/Rcpp/Module.h: exposing multiple constructors in modules * src/Module.cpp: The mangled class name is now "Rcpp_" plus the class name. The previous version used the address of the external pointer to the module, which was not constant. 2010-11-04 Douglas Bates * inst/include/Rcpp/module/Module_generated_Constructor.h: remove redundant 'return's. 2010-11-04 Romain Francois * inst/include/Rcpp/Module.h: experimental way to specify which constructor to use in classes exposed by modules. This is still too restrictive as it only allows one constructor. * inst/include/Rcpp/sugar/block/SugarMath.h: extend the SUGAR_MATH_1 macro so that we can apply functions (e.g. sqrt) directly on SEXP 2010-11-01 Dirk Eddelbuettel * DESCRIPTION (Version): Release 0.8.8 * debian/*: Similarly updated for new release to Debian 2010-10-30 Dirk Eddelbuettel * inst/include/RcppCommon.h: New define IS_GCC_450_OR_LATER * inst/include/Rcpp/Extractor.h: Do not enable Rcpp::Fast if g++ 4.5.0 or later is used -- we need to figure out what upsets it 2010-10-23 Romain Francois * inst/include/Rcpp/vector/MatrixRow.h: Faster row indexing * inst/include/Rcpp/vector/Matrix.h: added use of _ to get columns and rows of a matrix. For example if x is a NumericMatrix, x(_,i) returns the same as x.column(i) and x(i,_) returns the same as x.row(i) * inst/unitTests/runit.Matrix.R: unit tests for the above * inst/include/Rcpp/sugar/functions/sum.h: the sugar version of sum now takes care of missing values correctly * inst/include/Rcpp/sugar/functions/cumsum.h: sugar version of cumsum 2010-10-21 Romain Francois * inst/include/Rcpp/vector/MatrixColumn.h: Fixed indexing bug (mismatch between number of rows and number of columns * inst/unitTests/runit.Matrix.R: test fix above based on the R-help/Rcpp-devel thread: http://article.gmane.org/gmane.comp.lang.r.rcpp/851 * inst/include/Rcpp/vector/MatrixColumn.h: Column gains a operator= taking a sugar expression. Faster indexing (caching the pointer instead of calling nrow many times) * inst/include/Rcpp/vector/Matrix.h: first pass at making matrix indexing faster 2010-10-21 Dirk Eddelbuettel * inst/include/Rcpp/Module.h: Reorder instantiation for class_ 2010-10-20 Dirk Eddelbuettel * include/Rcpp/XPtr.h: Applied patch by Karl Millar * include/Rcpp/vector/Vector.h: Idem 2010-10-19 Dirk Eddelbuettel * src/posixt.cpp: Correct POSIXct, POSIXt ordering for R 2.12.0 2010-10-14 Dirk Eddelbuettel * DESCRIPTION (Version): Release 0.8.7 * debian/*: Similarly updated for new release to Debian 2010-10-10 Romain Francois * tests/doRUnit.R: workaround to disable tests on windows 64 until we can figure out what upsets R CMD check. * R/Module.R: expose the finalizer 2010-10-07 John M Chambers * R/Module.R: modify cpp_refMethods to substitute the .External directly with the method and class pointers. 2010-10-03 Dirk Eddelbuettel * inst/include/Rcpp/stats/random/r*: Added comment reminding users read up on Section 6.3 of "Writing R Extensions" and the need to call GetRNGstate() and PutRNGstate() when using R's RNGs 2010-09-30 Romain Francois * inst/include/Rcpp/vector/MatrixRow.h: Matrix row inherits VectorBase so that it becomes a sugar expression, so that we can do something like this: NumericMatrix x( ... ) ; NumericVector x0 = x.row(0) ; * inst/include/Rcpp/vector/MatrixColumn.h: idem for columns * cleanup: run make clean in the inst/doc directory to install the fake vignettes 2010-09-27 Romain Francois * inst/include/Rcpp/traits/is_sugar_expression.h: new trait class to recognize sugar expressions * inst/include/Rcpp/vector/Vector.h: operator=( sugar expression) no longer allocate unnecessary memory. 2010-09-26 Romain Francois * inst/include/Rpp/Fast.h: new helper class Rcpp::Fast that allows faster indexing of Vector * inst/include/Rcpp/sugar/operators/plus.h: port to operator+ the same improvements than in operator* 2010-09-25 Romain Francois * inst/include/Rcpp/routines.h: declare routines that are registered * src/Rcpp_init.c: register routines * R/*.R: use registration information in many .Call and .External functions to speed things up * inst/include/Rcpp/RangeIndexer.h: experimenting with loop unrolling 2010-09-24 John M Chambers * R/Module.R: modify cpp_fields to substitute the .Call directly with the field and class pointers; supplements the changes entered by Romain on 9-22. (svn rev 2165, 2141) * src/Rcpp_init.c: set up registration of .Call's (rev 2167) 2010-09-24 Romain Francois * inst/include/Rcpp/sugar/Range.h : Range gains some operators (++,--,n etc ...) * inst/examples/ConvolveBenchmarks/convolve3_cpp.cpp: using the new Range operators * inst/include/Rcpp/sugar/operators/times.h: speed improvements. Not using pointer to member functions seems to be beneficial. * inst/include/Rcpp/sugar/nona/nona.h: sugar function that wraps a sugar expression in an object that pretends it does not contain any missing values. This allows many sugar functions and operators to use their fast versions when we know that the object does not contain missing values. 2010-09-22 Romain Francois * R/Module.R: set [[ and [[<- as regular methods too, which restores previous behavior 2010-09-17 Romain Francois * src/Reference.cpp: new objects are created via a callback to R's new function, as R_do_new_object did always return the same environment * R/00_classes.R: new ref class C++Method to represent C++ methods and holding their external pointers directly (same idea as C++Field) * inst/include/Rcpp/Module.h: internal support for C++Method (template class S4_CppMethod) 2010-09-17 John M Chambers * R/00_classes.R, R/02_completion.R, et al.: use of environment underlying the reference classes removes need for slots in C++Object class (svn rev's 2133, 2134) 2010-09-16 Romain Francois * R/00_classes.R: moving classes definition here * inst/Rcpp/Module.h: added C++ class S4_field that builds S4 objects of class C++Field. Build the list of fields as part of the creation of the C++Class objects * src/Module.cpp: .Call functions CppField__get and CppField__set to get/set values of an object's field using external pointers directly (no std::map lookup internally) * R/Module.R: (unexported) functions .getField and .setField that call CppField__get and CppField__set * inst/include/Rcpp/Reference.h: skeleton for a Rcpp::Reference class that will help dealing with reference classes on the C++ side * src/Reference.cpp: implementation (needs update) 2010-09-16 John M Chambers * R/Module.R, tests/modRef.R: un-generic of new(); return a generator object for C++ classes. Use environment as superclass. 2010-09-15 Romain Francois * DESCRIPTION: added the declaration MinimumSvnRev to control which version of R-devel we need so that Rcpp fully works, currently set to 52905 * R/zzz.R: check the svn revision of R against the declared MinimumSvnRev requirement and print a message if necessary (this will only stay for the interim period while we develop 0.8.7 so that we all are on the same page. * inst/include/Rcpp/Module.h: added methods to class_Base : methods_arity and methods_voidness to query the number of arguments of methods of a class and if the method is void * R/Module.R: implement referenceMethods (from methods) for 'C++Class' 2010-09-11 Dirk Eddelbuettel * src/Date.cpp: Add include of unistd.h to make Solaris happy 2010-09-09 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.6 * debian/*: Similarly updated for new release to Debian 2010-09-08 Dirk Eddelbuettel * inst/include/RcppCommon.h: Also include typeinfo header file 2010-09-08 Romain Francois * inst/include/Rcpp/Module.h : added class_Base::property_names method to grab the names of all fields (properties) * src/Module.cpp : added R access (.Call) function CppClass__properties to grab the names of the fields (property) from the XP of a class * inst/include/Rcpp/Module.h : added class_Base::property_is_readonly method to query if a property is read only * src/Module.cpp : added R access (.Call) function CppClass__property_is_readonly to query if a class property is read only * inst/include/Rcpp/Module.h : added class_Base::property_class method to grab the C++ class of a property * src/Module.cpp : added R access (.Call) function CppClass__property_class to grab the C++ class of a property 2010-09-06 Dirk Eddelbuettel * inst/examples/ConvolveBenchmarks/exampleRCode.r: Rewritten / simplified using the rbenchmark::benchmark() function * DESCRIPTION: Added Suggests: on rbenchmark package 2010-09-04 Dirk Eddelbuettel * inst/examples/ConvolveBenchmarks/exampleRCode.r: Some cosmetics * inst/examples/ConvolveBenchmarks/convolve3_cpp.cpp: Remove one unneccessary loop to set values to zero (which the ctor does for us) 2010-09-03 Dirk Eddelbuettel * inst/doc/Rcpp-extending/Rcpp-extending.Rnw: Add highlight definitions * inst/doc/Rcpp-FAQ/Rcpp-FAQ.Rnw: Idem * inst/doc/Rcpp-package/Rcpp-package.Rnw: Idem 2010-09-02 Dirk Eddelbuettel * src/msvcmath.cpp: Undo unmotivated msvc patch * inst/include/Rcpp/msvc/: Idem * inst/include/Rcpp/XPtr.h: Idem * inst/include/RcppCommon.h: Idem * src/Date.cpp: Idem * DESCRIPTION: Added Suggests: on highlight package 2010-08-20 Romain Francois * inst/include/Rcpp/complex.h : binary operators for Rcomplex : +,-,*,/ 2010-08-15 Romain Francois * inst/include/Rcpp/sugar/SugarBlock.h: more control of the NA behavior in SUGAR_BLOCK_2. SUGAR_BLOCK_2 will now propagate the NA, and the new SUGAR_BLOCK_2_NA will use a fixed NA (can be true or false). This can be useful if the function that is sugar'ed never generates NA. * inst/include/Rcpp/sugar/undoRmath.h : undo the macros done by Rmath.h 2010-08-13 Douglas Bates * include/Rcpp.h: undo more defines from Rmath.h 2010-08-13 Romain Francois * inst/include/Rcpp/sugar/complex.h: simplify complex sugar functions Re, Im, Conj, Mod * inst/include/Rcpp/sugar/complex.h: new sugar functions operating on complex expressions: exp, log, sqrt, cos, sin, tan, acos, asin, atan, acosh, asinh, atanh, cosh, sinh, tanh * inst/unitTests/runit.sugar.R: added regression test for complex functions which did not handle NA properly before * DESCRIPTION: no longer requireing GNU make as we dont use it anymore * src/Makevars: removed the use of ifeq (which was the last thing requiring GNU make) 2010-08-12 Romain Francois * inst/include/Rcpp/sugar/math.h: replace previous versions of floor, abs, exp, ceil, ceiling with versions generated by the SUGAR_MATH_1 macro 2010-08-11 Romain Francois * inst/include/Rcpp/vector/vector.h: Vector gains constructor taking size and function pointers, acting as generators : Vector( const int& siz, stored_type (*gen)(void), bool seed = true ) template Vector( const int& siz, stored_type (*gen)(U1), const U1& u1, bool seed = true) template Vector( const int& siz, stored_type (*gen)(U1,U2), const U1& u1, const U2& u2, bool seed = true) so that for example : NumericVector( 10, norm_rand ) generates a N(0,1) vector of size 10 * inst/include/Rcpp/stats/random/rlnorm.h: Added rlnorm and rlnorm_ * inst/include/Rcpp/stats/random/rgamma.h: Added rgamma and rgamma_ * inst/include/Rcpp/stats/random/rt.h: Added rt and rt_ * inst/include/Rcpp/stats/random/rbinom.h: Added rbinom and rbinom_ * inst/include/Rcpp/stats/random/rnchisq.h: Added rnchisq and rnchisq_ * inst/include/Rcpp/stats/random/rgeom.h: Added rgeom and rgeom_ * inst/include/Rcpp/stats/random/rhyper.h: Added rhyper and rhyper_ * inst/include/Rcpp/stats/random/rnbinom_mu.h: Added rnbinom_mu and rnbinom_mu_ * inst/include/Rcpp/stats/random/rnbinom.h: Added rnbinom and rnbinom_ * inst/include/Rcpp/stats/random/rpois.h: Added rpois and rpois_ * inst/include/Rcpp/stats/random/rweibull.h: Added rweibull and rweibull_ * inst/include/Rcpp/stats/random/rlogis.h: Added rlogis and rlogis_ * inst/include/Rcpp/stats/random/rwilcox.h: Added rwilcox and rwilcox_ * inst/include/Rcpp/stats/random/rsignrank.h: Added rsignrank and rsignrank_ * inst/include/Rcpp/stats/random/rnorm.h: some optimization * inst/include/Rcpp/stats/random/rf.h: calculate n2/n1 just once * inst/include/Rcpp/sugar/SugarBlock.h : templates and macros to facilitate generation of sugar functions that take one or two double parameters * inst/include/Rcpp/sugar/math.h: using SugarBlock to generate new sugar functions: (1 parameter) : gamma, lgamma, digamma, trigamma, tetragamma, pentagamma, expm1, log1p, factorial, lfactorial, cos, acosh, atan, cos, cosh, log, log10, sqrt, sin, sinh, tan, tanh (2 parameter) : choose, lchoose, beta, lbeta, psigamma 2010-08-10 Douglas Bates * include/Rcpp/stats/nbinom[_mu].h: Replace conflicting data member name 'size' by 'siz' 2010-08-10 Romain Francois * inst/include/Rcpp/stats/random/rnorm.h: Added rnorm and rnorm_ * inst/include/Rcpp/stats/random/runif.h: Added runif and runif_ * inst/include/Rcpp/stats/random/rbeta.h: Added rbeta and rbeta_ * inst/include/Rcpp/stats/random/rcauchy.h: Added rcauchy and rcauchy_ * inst/include/Rcpp/stats/random/rchisq.h: Added rchisq and rchisq_ * inst/include/Rcpp/stats/random/rexp.h: Added rexp and rexp_ * inst/include/Rcpp/stats/random/rf.h: Added rf and rf_ * inst/include/Rcpp/stats/stats.h : fixed name clash reported on Rcpp-devel http://permalink.gmane.org/gmane.comp.lang.r.rcpp/610 2010-08-09 Romain Francois * inst/include/Rcpp/stats/lnorm.h: Added d-p-q (lnorm|weibull|logis|f) generated by the script * inst/include/Rcpp/vector/Vector.h: further dispatch to allow generators to be passed to constructors of Vector * inst/include/Rcpp/traits/has_iterator.h: new SFINAE detection of generators * inst/include/Rcpp/Generator.h : base template class for generators 2010-08-06 Douglas Bates * unitTests/runit.stats.R: Corrected instances of numeric arguments passed as integers, deleted tests for binomial with fixed parameter values. 2010-08-06 Romain Francois * ../scripts/stats.R: R script to generate the template code for dpq functions * include/Rcpp/stats/unif.h: Added d-p-q unif and tests * include/Rcpp/stats/gamma.h: Added d-p-q gamma and tests * include/Rcpp/stats/chisq.h: Added d-p-q chisq 2010-08-05 Douglas Bates * include/Rcpp/stats/beta.h: Added d-p-q beta and tests * include/Rcpp/stats/binom.h: Added pbinom and qbinom, and tests of same in runit.stats.R * include/Rcpp/stats/pois.h: Added ppois and qpois (plus tests in runit.stats.R). * include/Rcpp/stats/norm.h: Added pnorm and qnorm and corresponding tests in unitTests/runit.stats.R 2010-08-05 Dirk Eddelbuettel * inst/include/Rcpp/stats/norm.h: Added dnorm sugar function * inst/include/Rcpp/stats/t.h: Added dt, pt, qt sugar functions * inst/include/unitTests/runit.stats.R: Added corresponding tests 2010-08-05 Romain Francois * inst/include/Rcpp/sugar/functions/seq_along.h: added seq(int,int) to mimic the R syntax : seq( 0, 5 ) * inst/include/Rcpp/sugar/Range.h: fixed compiler confusion * inst/include/Rcpp/stats: new sugar functions Rcpp::stats::dpois and Rcpp::stats::dbinom inspired by Richard Chandler post on Rcpp-devel: http://lists.r-forge.r-project.org/pipermail/rcpp-devel/2010-August/000940.html * inst/include/Rcpp/sugar/sum.h: preliminary version of Rcpp::sum (does not deal with NA properly yet) 2010-08-04 Romain Francois * inst/include/Rcpp/sugar/: rework sugar matrix so that operator()(int,int) is always used instead of operator[](int) * inst/include/Rcpp/sugar/matrix/outer.h: new implementation based on LazyVector, so that the value from the vector expression is only retrieved once 2010-08-02 Romain Francois * inst/include/Rcpp/XPtr.h: give default values to tag and prot in XPtr ctor 2010-07-30 Romain Francois * inst/doc/Rcpp-quickref/* : new vignette Rcpp-quickref: quick reference guide to Rcpp API 2010-07-28 Romain Francois * inst/include/Rcpp/sugar/exp.h: adapt to stricter standards on solaris/suncc 2010-07-25 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.5 * debian/*: Similarly updated for new release to Debian 2010-07-17 Romain Francois * inst/include/Rcpp/vector/Vector.h: faster lhs use of names, only using callback to R if necessary. (discovered while profiling RProtoBuf) * inst/include/Rcpp/RObject.h : faster lhs and rhs use of RObject::slot, using R API functions R_do_slot and R_do_slot_assign 2010-07-16 Dirk Eddelbuettel * src/Date.cpp: Small fix which may make Solaris/SunStudio happy 2010-07-16 Romain Francois * man/Rcpp-package.Rd : removed old content and point to the Rcpp-package vignette for current guidelines. * DESCRIPTION: Updated to mention sugar and modules 2010-07-10 Romain Francois * src/Makevars: Remove last call to $shell by turning C++0x detection off (and into a switch users can edit) which should make builds more stable * src/Makevars.win: Idem * src/cxx0x/cxx0x.R: Detection script deprecated for now 2010-07-10 Romain Francois * man/CppClass-class.Rd: changed use of \linkS4Class to suppress a warning with the development version of R * man/CppObject-class.Rd: idem 2010-07-09 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.4 * debian/*: Similarly updated for new release to Debian 2010-07-09 Romain Francois * src/RObject.cpp: adapt the SlotProxy class to deal with the special case of the .Data slot (slot<- changes the internal SEXP) * R/Module.R: the C++Class now inherits from "character", to facilitate S4 method dispatch * src/Module.cpp: The CppClass ctor sets the .Data of the C++Class object to an obfuscated name to avoid class names clashes at the R level. 2010-07-08 Romain Francois * inst/include/Rcpp/sugar/functions/head.h: new sugar function : head * inst/include/Rcpp/sugar/functions/tail.h: new sugar function : tail * inst/include/Rcpp/sugar/functions/tail.h: new sugar function : diag 2010-07-07 Dirk Eddelbuettel * inst/README: Updated and now pointing to all the other documentation 2010-07-07 Romain Francois * inst/include/Rcpp/sugar/functions/rep.h: version of rep that takes a primitive as the first argument 2010-07-07 Dirk Eddelbuettel * inst/unitTests/runTests.R: Reverted to running all tests now that tests are reorganised using the one-compile-per-function scheme which significantly speeds up running of the numerous unit tests 2010-07-06 Dirk Eddelbuettel * src/Date.cpp: Imported mktime() from R (which is due to Arthur Olson) 2010-07-06 Romain Francois * inst/include/Rcpp/sugar/functions/ifelse.h: using compile time dispatch based on the NA-ness of the condition type. ifelse handles primitive arguments on the lhs, rhs or both * inst/include/Rcpp/sugar/functions/rev.h: new sugar function: rev 2010-07-05 Romain Francois * inst/include/Rcpp/RcppCommon.h : no more using variadic macros in RCPP_DEBUG * inst/include/Rcpp/vector/Matrix.h: move ncol, nrow, rows and cols in Matrix (used to be in Vector) * inst/include/Rcpp/traits/matrix_interface.h: new SFINAE helper to detect matrix interface (helps matrix sugar expressions) 2010-07-03 Romain Francois * inst/include/Rcpp/traits/result_of.h : also deal with functions taking two arguments (useful for e.g. outer) * inst/include/Rcpp/vector/MatrixBase.h : new CRTP base class for Matrix to facilitate sugar syntax on matrices. * inst/include/Rcpp/sugar/matrix/outer.h : new sugar function: outer * inst/include/Rcpp/sugar/matrix/row.h: new sugar function: row * inst/include/Rcpp/sugar/matrix/col.h: new sugar function: col * inst/include/Rcpp/sugar/matrix/lower_tri.h: new sugar function: lower_tri * inst/include/Rcpp/sugar/matrix/upper_tri.h: new sugar function: upper_tri * inst/include/Rcpp/sugar/functions/rep.h: new sugar function : rep * inst/include/Rcpp/sugar/functions/rep_len.h: new sugar function : rep_len * inst/include/Rcpp/sugar/functions/rep_each.h: new sugar function : rep_each 2010-07-02 Dirk Eddelbuettel * src/RcppStringVector: Now uses std::vector * inst/include/classic/RcppStringVector.h: Idem * inst/unitTests/runit.List.R: Added simple test for RcppStringVector 2010-07-01 Dirk Eddelbuettel * src/RcppDateVector: Index argument is int here as well * src/RcppDatetimeVector: Idem * inst/include/classic/RcppDateVector.h: Idem * inst/include/classic/RcppDatetimeVector.h: Idem * inst/unitTests/runit.List.R: Added simple test for RcppList 2010-06-30 Dirk Eddelbuettel * src/DateVector: Index argument is int; throw declared * src/DatetimeVector: Idem * inst/include/Rcpp/DateVector.h: Idem * inst/include/Rcpp/DatetimeVector.h: Idem 2010-06-28 Romain Francois * inst/include/Rcpp/sugar/Im.h: * inst/include/Rcpp/sugar/Re.h: * inst/include/Rcpp/sugar/Conj.h: * inst/include/Rcpp/sugar/Mod.h: added sugar functions for complex vectors: Re, Im, Conj, Mod 2010-06-27 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.3 * debian/*: Similarly updated for new release to Debian * inst/unitTests/runTests.R: Stop-gap measure to reduce the number of tests run on Windows as we now have so many tests that the build exceeds the time limit granted by the win-builder service. The forced reduction of tests can be overcome by adding --allTests as a command-line argument on Windows, or by running on another platform. 2010-06-25 Romain Francois * inst/include/Rcpp/posix.h: anticipate R 2.12.0 switch of classes POSIXt and POSIXct * inst/include/classic: New home for the 'classic' API headers. Also some refactoring of the internals so that they can interoperate better withuse the new API. 2010-06-24 Romain Francois * inst/include/Rcpp/vector/RangeIndexer.h: factored the RangeIndexer class out of Vector, so that we can at a later time specialize it for character vectors, lists, etc ... 2010-06-24 Dirk Eddelbuettel * inst/include/Rcpp/Date.h: add struct tm member variable and sensible (ie non-intra-day) accessor functions; add SEXP ctor * src/Date.cpp: Implementation of the above * inst/unitTests/runit.Date.R: tests for the above * inst/include/Rcpp/Datetime.h: New Datetime class * src/Datetime.cpp: Implementation for new Datetime class * inst/unitTests/runit.Datetime.R: first tests for Rcpp::Datetime * inst/include/Rcpp/Datetime_forward.h: API Integration * inst/include/Rcpp/DatetimeVector.h: New DatetimeVector class * src/Datetime.cpp: Implementation for new DatetimeVector class 2010-06-23 Dirk Eddelbuettel * src/Date.cpp: Import mktime00() from R's src/main/datetime.c, completed class implementation * inst/include/Rcpp/Date.h: Add mktime00() declaration * inst/include/Rcpp/DateVector.h: New DateVector class * src/Date.cpp: Implementation for new DateVector class 2010-06-23 Romain Francois * inst/include/Rcpp/Date_forward.h: forward declaration of Rcpp::Date and support for wrap( container of Rcpp::Date ), e.g. wrap( vector ) * inst/include/Rcpp/sugar/Range.h: added the concept of range to allow modification of several elements of a vector. * inst/examples/ConvolveBenchmarks: version of the convolution function using sugar indexing. 2010-06-22 Dirk Eddelbuettel * inst/include/Rcpp/Date.h: New Date class (not yet complete) * src/Date.cpp: Implementation for new Date class (not yet complete) * inst/unitTests/runit.Date.R: first tests for Rcpp::Date 2010-06-21 Dirk Eddelbuettel * inst/examples/SugarPerformance/: New example to benchmark the new syntactic 'sugar' classes 2010-06-19 Dirk Eddelbuettel * inst/include/RcppDoxygenExamples.h: Correct three wrong paths for ConvolveBenchmak example files, and add missing FastLM/ examples 2010-06-18 Romain Francois * inst/include/Rcpp/sugar/*: implementation of Rcpp sugar, covering binary operators (<,>,<=,>=,!=,==) for logical vectors or logical expressions, arithmetic operators (+,-,*,/) for vectors and expressions, and several functions similar to the R functions of the same name, currently: abs, all, any, ceiling, diff, exp, ifelse, is_na, lapply, pmin, pmax, pow, sapply, seq_along, seq_len, sign * inst/doc/Rcpp-sugar/Rcpp-sugar.Rnw: vignette documenting Rcpp sugar 2010-06-17 Romain Francois * inst/include/Rcpp/Vector.h: split into more manageable files * inst/include/Rcpp/vector/VectorBase.h: simplify the VectorBase class so that it is just implementing CRTP. It does not inherit from RObject anymore. This will help implementation of sugar. 2010-06-16 Dirk Eddelbuettel * src/RcppDateVector.cpp: Also provide non-const operator()(int i) * inst/include/RcppDateVector.h: Idem 2010-06-16 Romain Francois * inst/include/Rcpp/InternalFunction.h: new class Rcpp::InternalFunction * R/Module.R: R support for Rcpp::InternalFunction * inst/include/Rcpp/Module.h: added the LOAD_RCPP_MODULE macro to allow loading a module from C++ * R/Module.R: if the first argument is an external pointer already, Module assumes it is a module pointer. (R support for the item above) 2010-06-15 Dirk Eddelbuettel * src/RcppDatetimeVector.cpp: Use std::vector internally * inst/include/RcppDatetimeVector.h: Idem * src/RcppDateVector.cpp: Use std::vector internally * inst/include/RcppDateVector.h: Idem 2010-06-14 Dirk Eddelbuettel * src/RcppDatetimeVector.cpp: Add constructor from int * inst/include/RcppDatetimeVector.h: Idem * src/RcppDateVector.cpp: Add constructor from int * inst/include/RcppDateVector.h: Idem 2010-06-13 Dirk Eddelbuettel * src/RcppResultSet.cpp: Proper template specialisation for wrap * inst/include/RcppResultSet.h: Idem * src/RcppDateVector.cpp: Add const qualifier to operator()(int i) * inst/include/RcppDateVector.h: Idem 2010-06-13 Romain Francois * inst/include/Rcpp/Vector.h: added new factory functions for Vector: Vector::import and Vector::import_transform 2010-06-12 Dirk Eddelbuettel * src/RcppDate.cpp: Simple RcppDate(SEXP) ctor added * inst/include/RcppDate.h: Idem * src/RcppResultSet.cpp: carved out four new wrap() functions by splitting the existing code in add() methods off 2010-06-11 Romain Francois * R/help.R: workaround to allow the syntax "Rcpp ? something" to bring Rcpp documentation * inst/include/Rcpp/Module.h: support for exposing public data members * inst/doc/Rcpp-modules/Rcpp-modules.Rnw: a section to mention fields as a way to expose data members * inst/Rcpp/traits/is_na.h : new helper class Rcpp::traits::is_na 2010-06-09 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.2 * debian/*: Similarly updated for new release to Debian 2010-06-08 Romain Francois * src/RcppCommon.cpp: track if demangling is available (currently only available with gcc) 2010-06-08 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.1 * debian/*: Similarly updated for new release to Debian 2010-06-07 Dirk Eddelbuettel * inst/doc/Rcpp-extending*: Extended mini vignette "Rcpp-extending" 2010-06-07 Romain Francois * inst/doc/Rcpp-extending*: Added new mini vignette "Rcpp-extending" 2010-06-05 Dirk Eddelbuettel * inst/doc/Rcpp-FAQ*: Extended mini vignette "Rcpp-FAQ" 2010-06-05 Romain Francois * inst/doc/Rcpp-FAQ*: Added new mini vignette "Rcpp-FAQ" 2010-06-04 Romain Francois * inst/include/Rcpp/Module.h: * R/Module.R: support for properties of C++ objects 2010-06-03 Romain Francois * src/RcppCommn.cpp: added show method for C++Object and C++Class * inst/include/Rcpp/XPtr.h: getTag and getProtected are deprecated, will be removed in Rcpp 0.8.2. methods tag and prot should be used instead. The new methods support both lhs and rhs use. 2010-06-02 Romain Francois * inst/include/Rcpp/traits/r_type_traits.h: added missing support for std::complex, needed by RcppArmadillo * src/RcppCommon.cpp: added internal .Call function as_character_externalptr to extract the address of the pointer wrapped by an external pointer 2010-06-01 Romain Francois * inst/doc/Rcpp-package*: new mini vignette "Rcpp-package" to improve the documentation of Rcpp.package.skeleton and details the steps involved in making a package that uses Rcpp * inst/doc/Rcpp-modules/Rcpp-modules.Rnw: document how to use modules in other packages (namespace, etc ...) * R/Rcpp.package.skeleton: added the module argument * R/Module.R: prompt method for Module objects to generate skeleton of an Rd file with the list of functions and classes defined by the module. 2010-05-30 Romain Francois * R/Module.R: completion for C++ modules. 2010-05-29 Romain Francois * R/Module.R: when a Module is loaded, it creates extensions of the class C++Object for each internal class to enable S4 dispatch * R/Module.R: support for completion of methods of C++ objects 2010-05-28 Romain Francois * R/cppfunction.R: withdrawn, we now use inline::cxxfunction which is more flexible and we no longer need to depend on inline * man/cppfunction.Rd: * * inst/unitTests/runTests.R: The tests now require a recent version of inline (>= 0.3.4.2) 2010-05-27 Romain Francois * inst/include/Rcpp/Module.h: adding support for registering a free function that takes a pointer to the class of the wrapped object as first argument in class_ 2010-05-26 Romain Francois * inst/include/Rcpp/Module.h: * src/Module.cpp : limited support for exposing c++ classes in Rcpp modules * R/Module.R : classes "C++Class", "C++Object" holding external pointers and $ method dispatching internally 2010-05-24 Dirk Eddelbuettel * src/Rcpp*.cpp: Moved template code from the older API to headers headers in inst/include/*.h; removed empty source files 2010-05-21 Romain Francois * R/exceptions.R: rework rcpp_tryCatch to prevent evaluating the expression too early (reported by Doug Bates on Rcpp-devel) * src/Evaluator.cpp: rework Evaluator::run() so that it correctly evaluates inside an environment (reported by Doug Bates on Rcpp-devel) 2010-05-20 Romain Francois * inst/include/Rcpp/Vector.h : correct throw specs for vector_from_string (reported by Brian Ripley from solaris) * inst/include/Rcpp/internal/Proxy_Iterator.h: fixed constness of several operators in Proxy_Iterator to try to suite suncc/solaris * inst/include/Rcpp/config.h: define RCPP_ENABLE_MODULES to hide the experimental module features from the official api * R/getDLL.R: removed and promoted to getDynLib in inline 2010-05-19 Romain Francois * inst/include/Rcpp/as.h: add throw specification to as specialization, reported by suncc compiler on CRAN checks * inst/include/Rcpp/Module.h : adding the concept of Rcpp modules, inspired from boost.python * R/Module.R: R side support for modules * R/getDLL.R: generic (s4) function to get the DLL based on either its name e.g. getDLL( "Rcpp" ) or an object of class CFunc (from the inline package) 2010-05-17 Dirk Eddelbuettel * DESCRIPTION: Release 0.8.0 * debian/*: Similarly updated for new release to Debian 2010-05-11 Romain Francois * inst/include/Rcpp/traits/*.h: added support for long long int and unsigned long long int, which is size_t on win64 2010-05-10 Romain Francois * inst/include/Rcpp/Dimension.h: added a const operator[], requested in the Rcpp-devel thread : http://article.gmane.org/gmane.comp.lang.r.rcpp/327 * inst/include/Rcpp/preprocessor.h: added __rcpp_info__ pseudo reflection information to RCPP_XP_FIELD * inst/unitTests/runit.macros.R: testing RCPP_XP_FIELD 2010-05-06 Romain Francois * inst/include/Rcpp/DataFrame.h: DataFrame( RObject::SlotProxy ) and DataFrame( RObject::AttributeProxy ) constructors * inst/include/Rcpp/DataFrame.h: DataFrame::create now uses the R function data.frame and not as.data.frame, which respects the stringsAsFactors argument. * inst/include/Rcpp/preprocessor.h: added RCPP_XP_FIELD_SET and RCPP_XP_FIELD_SET macros to generate getter and setter for a field of a class handled by an external pointer. RCPP_XP_FIELD is modified to generate both getter and setter 2010-05-05 Romain Francois * inst/include/Rcpp/S4.h: S4 gains a "is" method to identify if an object is of a given S4 class, following Doug's advice in lme4a * inst/include/Rcpp/algo.h: new STL-like algorithms Rcpp::any and Rcpp::any_if * inst/include/Rcpp/Vector.h: Vector gains a constructor taking an RObject::SlotProxy and a constructor taking an RObject::AttributeProxy, allowing this construct NumericVector x( y.slot( "foo" ) ) 2010-05-04 Romain Francois * inst/include/Rcpp/preprocessor_generated.h: new macros to hide most of the boiler plate code RCPP_FUNCTION_0, ..., RCPP_FUNCTION_1 RCPP_FUNCTION_VOID_0, ... RCPP_XP_METHOD_0, ... RCPP_XP_METHOD_CAST_0, ... RCPP_XP_METHOD_VOID_0, ... 2010-05-03 Dirk Eddelbuettel * inst/unitTests/runit.DataFrame.R: unit tests for Rcpp::DataFrame 2010-05-03 Romain Francois * inst/include/Rcpp/exceptions.h : move the what methods of exception classes so that the symbol is defined for sure in the shared library. This seems to make a difference due to vague linkage issues. Decrypted from http://gcc.gnu.org/wiki/Visibility 2010-05-02 Romain Francois * inst/include/Rcpp/as.h: add throw(not_compatible) in Rcpp::as * inst/include/Rcpp/clone.h: the clone(SEXP) moves to the headers 2010-04-28 Romain Francois * inst/include/Rcpp/Vector.h: changed Vector( size_t ) to Vector( int ) to allow Vector( 0 ) and Vector::create() 2010-04-27 Romain Francois * inst/include/Rcpp/preprocessor.h: new macro RCPP_ENUM_TRAITS to generate traits needed to support wrap for an enum type (used in RProtoBuf) * R/Rcpp.package.skeleton.R: correctly handle the example_code argument 2010-04-26 Romain Francois * inst/include/Rcpp/DataFrame_*.h: new class Rcpp::DataFrame * inst/include/Rcpp/preprocessor.h: added RCPP_XP_FIELD macro * inst/include/Rcpp/preprocessor_generated.h: added the set of macros RCPP_WRAPPER_0, ..., RCPP_WRAPPER_65 to help wrapping existing C functions into .Call callables functions 2010-04-16 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.12 * debian/*: Similarly updated for new release to Debian * RcppLdpath.R: Remove shQuote() from trying to protect spaces in Windows pathnames as it breaks backticks expansion usage 2010-04-06 Romain Francois * inst/include/Rcpp/traits/*.h: added support for long 2010-04-04 Romain Francois * inst/include/* : headers are moved to inst/include so that they are are not duplicated on multi arch platforms * R/RcppLdPath.R: RcppCxxFlags is updated to reflect the above change * src/Makevars: simplified as the headers don't need to be copied to each arch lib directory anymore * src/Makevars.win: same * inst/include/Rcpp/Vector.h : Vector<> gains a templated assignment operator 2010-04-02 Romain Francois * src/Rcpp/Formula.h: new Rcpp::Formula class * inst/unitTests/runit.Formula.R: unit test for Rcpp::Formula 2010-03-26 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.11 * debian/*: Similarly updated for new release to Debian * inst/examples/FastLM: Updated to use new create() method * inst/unitTests/runit.Matrix.R: New unit test new Matrix constructors 2010-03-26 Romain Francois * src/Rcpp/Vector.h: Fixed bug in diag() 2010-03-23 Dirk Eddelbuettel * inst/unitTests/runit.CharacterVector.R: New unit test for bug found by Doug 2010-03-23 Romain Francois * src/Rcpp/Vector.h: fixed critical bug. Vector did not have copy constructor and assignement operators * src/exceptions.cpp: added the demangle helper function to help debugging * src/RcppCommon.h: added the DEMANGLE macro and the RCPP_DEBUG macro to help debugging. 2010-03-20 Romain Francois * src/Rcpp/Vector.h : Vector gains a templated fill method to fill all elements of a vector with the same value 2010-03-19 Romain Francois * src/Rcpp/Vector.h : Matrix gains a diag method to create diagonal matrices * src/Rcpp/Named.h: Named is no longer a class, but a templated function. This preserves all the existing interface, but also allows Named to be used in making simple vectors, e.g through the Vector::create factory functions * src/Rcpp/Vector.h: Vector gains the "create" factory methods taking up to 20 arguments that can be named (using the Argument class or the _ placeholder) * src/Rcpp/make_list.h: removed since Vector::create does the job more generically and more efficently 2010-03-19 Dirk Eddelbuettel * src/Rcpp/Vector.h: Matrix now also accepts a single int in the constructor to create matrices of square sizes * src/RcppFrame.h: Patch by Alistair Gee to make ColDatum more robust src/RcppFrame.h: Idem * inst/unitTests/runit.RcppFrame.R: New unit test for RcppFrame 2010-03-16 Romain Francois * src/Rcpp/make_list.h: set of helper factories make_list to facilitate production of named generic vectors. * src/Rcpp/Named.h: new class Rcpp::Argument similar to Named but does not contain the object, just the name. The templated Argument::operator= makes a Named. This allows an application to define a set of arguments that it uses in order to have a nicer construct. see the runit.Argument.R file for an example 2010-03-15 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.10 * debian/*: Similarly updated for new release to Debian * RcppLdpath.R: Use shQuote() to protect spaces in Windows pathnames 2010-03-15 Romain Francois * inst/codebloat/codebloat.R: script to generate code (creating a pairlist with up to n arguments). * src/Rcpp/Function.h : Function gains a body method to retrieve the body of the function (using the BODY macro from Rinternals.h) 2010-03-14 Romain Francois * src/Rcpp/S4.h : Rcpp::S4 gains a new constructor taking a string reference and building a new S4 object of that type. This throws an exception if the object is not successfully created (e.g the class is not a known S4 class) 2010-03-13 Romain Francois * src/Rcpp/S4.h : new class Rcpp::S4 2010-03-12 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.9 * debian/*: Similarly updated for new release to Debian 2010-03-12 Romain Francois * inst/unitTests/runit.environments.R: mac os has a different locale * src/Rcpp/traits/is_convertible.h: the detection is now performed without the help of cxx0x or tr1 which makes it compatible with gcc 4.2 * src/Rcpp/traits/is_same.h: new traits is_same to help detect if two types are the same (not currently used) * src/Rcpp/traits/wrap_type_traits.h: use "unsigned int" instead of "size_t" in the template specializations (64 bit compatibility) 2010-03-10 Dirk Eddelbuettel * R/RcppLdPath.R: More specific about quote-protection of path on Windows * inst/doc/Rcpp-introduction.Rnw: Applied several fixes kindly suggested by Matt Kraai 2010-03-09 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.8 * debian/*: Similarly updated for new release to Debian 2010-03-09 Romain Francois * man/Rcpp.package.skeleton.Rd: some more documentation 2010-03-07 Dirk Eddelbuettel * inst/doc/Rcpp-introduction.Rnw: Added vignette based on a recent paper 2010-03-07 Romain Francois * src/Rcpp/StringTransformer.h: new class template StringTransformer that allows using a character by character function to modify elements of a string vector (example available in package RcppExamples) * src/Rcpp/Vector.h: string_proxy::iterator is made const char* because R uses a global cache for the CHARSXP 2010-03-05 Romain Francois * src/Rcpp/Vector.h: string_proxy gains begin(), end(), size(), and operator[] for iterating over characters of the CHARSXP 2010-03-02 Romain Francois * src/Rcpp/Vector.h: Vector gains a nested r_type type that is an integral_constant to facilitate TMP * src/RcppCommon.{h,cpp}: added RCPP_CALL_VECTOR and RCPP_CALL_MATRIX macros to facilitate calling a function templated by T = Vector the macro hides the boiler-plate switch( TYPEOF(x) ){ case INTSXP : ... } 2010-03-01 Romain Francois * src/Rcpp/Vector.h: more typedef : CharacterMatrix, StringMatrix, GenericMatrix, ExpressionMatrix, ListMatrix * src/ExpressionVector.cpp : replaced by templates in Vector.h * src/Rcpp/Vector.h: use templates to cover ExpressionVector additional methods : eval() and eval(const Environment& ) 2010-02-28 Romain Francois * src/Rcpp/Vector.h : more generic code for vectors. All vector types are now generated from the template Rcpp::Vector where RTYPE is one of INTSXP, LGLSXP, REALSXP, RAWSXP, STRSXP, VECSXP or EXPRSXP. 2010-02-24 Romain Francois * src/Rcpp/exceptions.h: some exception classes factored out * src/Rcpp/VectorBase.h: now a template, using the Curiously recurring template pattern (the type parameter is the derived class) * src/Rcpp/SEXP_Vector.h: the intermediate class SEXP_Vector_Base is removed, reverting the change on 2010-02-09. This will facilitate the introduction of the Curiously recurring template pattern on vectors * src/Rcpp/MatrixRow.h : Row has been factored out of SimpleVector into a separate template class Rcpp::MatrixRow * src/Rcpp/SimpleVector.h: gains a row method that returns a SimpleVector::Row, aka MatrixRow * src/Rcpp/CharacterVector.h : gains a row method that returns a CharacterVector::Row, aka MatrixRow * src/Rcpp/SEXP_Vector.h : gains a row method that returns a SEXP_Vector::Row aka MatrixRow * src/Rcpp/MatrixColumn.h : Column class to access elements of a matrix column 2010-02-23 Romain Francois * src/Rcpp/SimpleVector.h: added the class SimpleVector::Row to support STL algorithms working on a row of a matrix. * src/Rcpp/internal/ListInitialization.h: new class that supports use of operator, (inspired from blitz) giving this notation: IntegerVector x(3); x = 0, 1, 2 ; 2010-02-21 Romain Francois * src/Rcpp/as.h: more generic as implementation. primitive types are handled through templates which for example makes it possible to as in RProtoBuf. std::deque and std::list become as'able when T is a primitive type as indicated by the Rcpp::traits::r_type_traits * src/as.cpp: removed since as is now fully implemented via templates 2010-02-19 Romain Francois * src/Rcpp/as.h: as now delegates to a template class Exporter since partial specialization was not possible with the interface of as. It is possible to partially specialize Exporter. std::vector when T is a primitive type is now handled through Exporter. Some support Exporter have been added and used in RcppArmadillo * src/Rcpp/internal/wrap.h: support for std::complex and std::complex (needed for RcppArmadillo) * src/Rcpp/traits/wrap_type_traits.h : The Importer concept has been introduced to support wrap() of more types. If a class has a typedef "r_import_type" then the following interface is assumed and used. The corresponding class must have methods int size() and r_import_type get(int). As usual further dispatch is performed based on r_import_type (primitive, etc ...). RcppArmadillo has an example of this for wrapping arma::field objects using the FieldImporter class. 2010-02-18 Romain Francois * src/Rcpp/Language.h: added fixed_call to support STL algorithms similar to generate. * inst/unitTests/runit.Language.R: unit test for fixed_call * src/Rcpp/Environment.h: Environment gains a find method which searches for a binding in the associated environment but also in all its parents, as opposed to get which just looks in the environment. 2010-02-17 Dirk Eddelbuettel * src/Makevars: Simplified as RcppExample.cpp is shipped off * src/Makevars.win: Simplified as RcppExample.cpp is shipped off 2010-02-17 Romain Francois * src/Rcpp/SEXP_Vector.h : The lhs use of operator[](string) has been improved so that if the name does not exist in the vector, the vector grows. * inst/unitTests/runit.GenericVector.R: new unit test test.List.implicit.push.back about the new operator[](string) * src/Rcpp/SimpleVector.h : new template class SimpleMatrix that derives from SimpleVector, with typedefs NumericMatrix IntegerMatrix, LogicalMatrix, RawMatrix, ComplexMatrix. The actual functionality comes from SimpleVector but SimpleMatrix has constructors and assignment operators that behave slighlty differently : they check that their input is a matrix * src/Rcpp/traits/wrap_type_traits: added support for float * src/Rcpp/Rcpp.h: now including RObject here instead of in RcppCommon.h because RObject is a client of implicit converters (attr) and so we need to leave a hook for third party code, e.g. RcppArmadillo 2010-02-16 Dirk Eddelbuettel * src/Makevars.wim: Applied improved version kindly supplied by Brian Ripley * R/RcppExample.R, man/RcppExample.Rd: Moved to RcppExamples package * man/RcppDate.Rd, man/RcppParams.Rd, man/RcppResultSet.Rd, RcppVector.Rd, src/RcppExample.cpp: Idem * inst/examples/FastLM: Slightly reworked, actual code factored out and used in a per-library demo/test script and a joint benchmark.r 2010-02-15 Dirk Eddelbuettel * inst/examples/FastLM: New example directory with two 'fast lm' implementations using, respectively, GNU GSL (in C) and Armadillo (in C++); Armadillo is seen as faster for lack of extra copying 2010-02-14 Romain Francois * src/Rcpp/Language.h: accepting Function in unary_call and binary_call to support STL algorithms using R functions. 2010-02-14 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.7 * debian/*: Similarly updated for new release to Debian 2010-02-14 Romain Francois * src/Rcpp/Language.h: fixing serious bug. The 'code bloat' constructors taking a std::string did not explicitely create a symbol, so the created calls were wrong. * src/Rcpp/Language.h: new template classes Rcpp::unary_call and Rcpp::binary_call to allow use of Language objects in STL algorithms. * inst/unitTests/runit.Language.R: unit test and example of using unary_call and binary_call 2010-02-12 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.6 * NEWS: Updated * debian/*: Similarly updated for new release to Debian 2010-02-12 Romain Francois * src/Rcpp/Environment.h: Environment gains a default constructor. This is needed for RInside. 2010-02-10 Romain Francois * src/Rcpp/SEXP_Vector.h: SEXP_Vector (and therefore ExpressionVector and GenericVector, a.k.a List) gain methods push_front, push_back and insert that are templated and use the 'implicit wrap idiom' to add an element to the front or, the back or an arbitrary (valid) position of the list, pushing other elements. Internally the SEXP is actually copied. * src/Rcpp/SEXP_Vector.h: SEXP_Vector gains an erase method modelled after std::vector<>::erase to remove elements from a list. erase has a single iterator (or int) form that removes one element, and a range based version erase(iterator first, iterator last) that erases all elements between first and last. * src/Rcpp/VectorBase.h: VectorBase gains a version of offset to support retrieving the offset of a given name of a vector: offset( const std::string& name) * src/Rcpp/SimpleVector.h : uses the new offset to perform names based indexing (FR #808) * src/Rcpp/SEXP_Vector.h: same * src/Rcpp/CharacterVector.h: same * inst/unitTests/runit.GenericVector.R: unit tests for names based indexing * inst/unitTests/runit.IntegerVector.R: same * inst/unitTests/runit.CharacterVector.R: same 2010-02-09 Dirk Eddelbuettel * inst/skeleton/Makevars: Use $R_HOME/bin indirection * inst/skeleton/Makevars.win: Idem 2010-02-09 Romain Francois * src/Rcpp/SEXP_Vector.h: The functionality of SEXP_Vector that was independent of the template parameter was factored out into a new base class SEXP_Vector_Base. This follows the advice of item 44 of Effective C++. * src/Rcpp/SEXP_Vector.h: SEXP_Vector_Base::iterator is introduced as well as methods begin() and end() to support use of stl algorithms on lists. * inst/unitTests/runit.GenericVector.R: new unit test for testing SEXP_Vector_Base::iterator and illustrating a c++ version of lapply using std::transform * src/Rcpp/CharacterVector.h: CharacterVector gains a random access iterator, begin() and end() to support STL algorithms. The iterator dereferences to a StringProxy * src/Rcpp/RObject.h: remove RObject::asFoo methods which were deprecated in Rcpp 0.7.5. The alternative is to use Rcpp::as 2010-02-08 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.5 * debian/*: Similarly updated for new release to Debian 2010-02-07 Romain Francois * src/RcppSexp.h: class RcppSexp removed (was deprecated) * src/Rcpp/*.h: defaults copy constructors and assignment operators have been added for all classes extending RObject. Otherwise the compiler generates default versions that circumvent the garbage collection management 2010-02-06 Dirk Eddelbuettel * inst/examples/functionCallback/newApiExamples.r: Added simpler version using the new API * inst/examples/functionCallback/newApiExamples.r: Updated * inst/unitTests/runit.RcppVector.R: added test for NA/NaN * inst/unitTests/runit.RcppMatrix.R: idem 2010-02-06 Romain Francois * src/Rcpp/RObject.h : asFoo methods are deprecated. * src/Rcpp/DottedPair.h : using R_len_t instead of int to anticipate future changes in R * src/Rcpp/VectorBase.h: idem * src/DottedPair.cpp: idem * src/VectorBase.cpp: idem * src/as.cpp: idem * src/Rcpp/SimpleVector.h: SimpleVector is now only parameterized by the SEXP type. The c type is automatically retrieved using the storage_type trait class. 2010-02-05 Dirk Eddelbuettel * inst/THANKS: Added in order to show our appreciation 2010-02-04 Romain Francois * src/Rcpp/DottedPair.h: code bloat to allow creation of DottedPair containing up to 5 objects without variadic templates RInside for example needs this. * src/Rcpp/Language.h: same * src/Rcpp/Pairlist.h: same * src/Rcpp/grow.h: same * src/Rcpp/internal/wrap.h : one more level of dispatch to identify if there needs a cast between the primitive iterated over and the target storage type. For example size_t needs a cast to be stored in an integer vector. This will be useful for the RProtoBuf package with e.g. types like google::protobuf::int64 which needs to be cast to double. Consequently the special handling of bool has been withdrawn as bool can now be assimilated to a primitive type that does require casting (to int) 2010-02-03 Romain Francois * src/Rcpp/VectorBase.h: VectorBase gains a names method that uses the proxy pattern to get or set the names of a vector * src/Rcpp/DottedPair.h: DottedPair gains a << operator to add an object to the queue of the list. this is much useful when variadic templates are not available * src/Rcpp/RObject.h: support for slot assignment. The slot method now uses the proxy pattern. * inst/unitTests/runit.S4.R: unit test for slot assignment 2010-02-02 Romain Francois * src/internal/r_coerce.h : coercion is now handled by a templated function r_coerce, for example r_coerce takes an int, performs coercion and returns a double * src/traits/has_iterator.h : introduce a trait that uses the SFINAE idiom to check if a class T has a nested type called "iterator". This helps wrap dispatch which now uses the range based wrap implementation in that case * src/Rcpp/wrap.h: The range based wrap function is exposed at the Rcpp:: level. The interface is wrap( InputIterator first, InputIterator last ) and dispatch is performed internally using iterator traits 2010-02-01 Romain Francois * src/traits/wrap_type_traits.h: new namespace Rcpp::traits:: to host Rcpp type traits used by the template meta programming dispatching of wrap 2010-01-31 Dirk Eddelbuettel * doxyfile: several updates plus improvements related to examples/ * src/RcppDoxygenExamples.h: A phony empty file needed mainly to define a few \example tags for Doxygen 2010-01-31 Romain Francois * src/Rcpp/internal/wrap.h: more wrap for stl templates are candidate for wrap (when T can be wrapped) std::list -> vector or list std::multiset -> vector or list std::map -> named vector or named list std::multimap -> named vector or named list std::tr1::unordered_map -> named vector or named list std::tr1::unordered_set -> vector or list std::tr1::unordered_multiset -> vector or list * inst/unitTests/runit.wrap.R : unit tests for the new wrappable types 2010-01-30 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.4 * debian/*: Similarly updated for new release to Debian * inst/unitTests/runit.RcppMatrix.R: also test STL return * inst/unitTests/runit.RcppVector.R: added 2010-01-30 Romain Francois * src/Rcpp/internal/wrap.h: rework wrap using traits and template meta programming. wrap is now really a template and has many generated specializations. This file is a private header and should only be included by RcppCommon.h * src/Rcpp/Language.h: Language gains Function aware constructors and eval methods 2010-01-28 Romain Francois * src/Rcpp/DottedPair.h: DottedPair::Proxy are no more lazy, i.e traversal of the pair list happens at construction time, so that the proxy can be created once and used many times more efficiently. * src/Rcpp/DottedPair.h: Pairlist and Language are now derived from the new virtual class DottedPair since both class were almost identical * src/Rcpp/SimpleVector.h: simple vectors gain a range based assign method and a range based assign constructor * inst/unitTests/runit.IntegerVector.R: new unit test test.IntegerVector.range.constructors * src/Rcpp/Dimension.h: new class Rcpp::Dimension to support creation of vectors with dimensions * src/Rcpp/*Vector.h: using Rcpp::Dimension * src/Rcpp/SimpleVector.h: data is initialized with 0 when the object is constructed from size or Dimension constructor * inst/unitTestsrunit.CharacterVector.R: new unit test to test constructors using Dimension * inst/unitTests/runit.IntegerVector.R: idem * inst/unitTests/runit.GenericVector.R: idem * R/unit.tests.R: new unexported function "test" to trigger unit tests using installed test cases * src/Rcpp/CharacterVector.h: minor bug fix in assign * inst/unitTest/runit.RcppResultSet.R: compare time using as.numeric to avoid timezone problems 2010-01-27 Dirk Eddelbuettel * inst/unitTests/runit.RcppMatrix.R: added * inst/unitTests/runit.RcppMatrixView.R: added * inst/unitTests/runit.RcppVector.R: added * inst/unitTests/runit.RcppVectorView.R: added 2010-01-27 Romain Francois * src/Rcpp/CharacterVector.h: CharacterVector gains a default constructor * src/Rcpp/CharacterVector.h: CharacterVector gains range constructors and range based assign methods facilitating construction from iterators * inst/unitTests/runit.CharacterVector.R: unit tests for assign and range based constructors * src/Rcpp/CharacterVector.h: CharacterVector::StringProxy gets a printing operator <<(std::ostream& ) * src/Rcpp/Environment.h: removed the static Environment::RCPP_NAMESPACE which caused problems when embedding R * src/Rcpp/RObject.h: RObject::AttributeProxy::operator RObject replaced by templated implicit conversion operator, delegating the actual work to as<>. * src/Environment.h: Binding::operator RObject is removed since it can be automatically generated by the templated implicit conversion operator * man/RcpUnitTests.Rd: fix html rendering * inst/doc/Makefile: clean the index.html file before copying it 2010-01-26 Dirk Eddelbuettel * src/RcppDatetime.cpp: New SEXP-based constructor * src/RcppDatetime.h: idem, bug fix for operator- * src/RcppDate.h: new accessor getJulian() [relative to epoch just like R's julian()] to complement getJDN() * inst/unitTests/runit.RcppDatetime.R: added 2010-01-26 Romain Francois * src/Rcpp/clone.h: explicit cloning of RObjects. The clone template function creates a new object of the same class as the object it is passed in, encapsulating a duplicate of the SEXP contained by the input RObject. * src/Rcpp/r_cast.h: new template function to handle casts from one SEXP to another. This is mostly useful internally * src/Rcpp/VectorBase.h: VectorBase gains a offset method that is responsible to calculate the correct offset based on variable number of size_t arguments. currently the number of arguments can be 1 (vector indexing) and 2 (matrix indexing) but arbitrary number of arguments will be added later for arbitrary array-like indexing. * src/Rcpp/SimpleVector.h: outsourcing offset calculation to VectorBase::offset * src/Rcpp/CharacterVector.h: use offset to implement matrix-like indexing for matrices of strings * inst/unitTests/runit.CharacterVector.R: unit test for matrix indexing (test.CharacterVector.matrix.indexing) * inst/Rcpp/SEXP_Vector.h: use offset to implement matrix like indexing on lists * inst/unitTests/runit.GenericVector.R: unit test for matrix indexing (test.List.matrix.indexing) 2010-01-26 Dirk Eddelbuettel * inst/unitTests/runit.RcppDate.R: added 2010-01-25 Romain Francois * src/Rcpp/wrap.h: wrap is back at being a template. The template parameter T is first converted to SEXP implicitely and the wrap(SEXP) method is used. This allows clients to only have to implement an implicit conversion to SEXP operator for their class and have wrap for free. * src/Rcpp/SEXP_Vector.h: factored out ExpressionVector and GenericVector into a templated SEXP_Vector class parameterized by the SEXP type (VECSXP or EXPRSXP). GenericVector and ExpressionVector now are generated from the template. This will ease adding features to both classes. * src/as.cpp: also use coercion for as, as, as as (FR #768) * src/Rcpp/as.h: smarter template as, now the template attempts to create an object by passing the SEXP as the first parameter, so any class that has a constructor taking a SEXP can be as<>'ed. see item below for how this can be useful * src/Rcpp/Environment.h: lhs use of Environment::Binding is now a bit smarter and uses as<> to implicitely convert the SEXP to the requested type, so that if as makes sense, this works: Foo foo = env["x"] ; * src/Rcpp/Environment.h: Environment::assign gains a templated form so that we can assign anything that can be wrapped to a name in an environment. * inst/unitTests/runit.environments.R: new unit test 'test.environment.assign.templated' to test the templated assign * src/Makevars(.win?): listen to the RCPP_CXX0X environment variable and if set to "yes" attempt to add c++0x support if possible 2010-01-24 Dirk Eddelbuettel * configure.in: Withdrawn as OS X universal binaries are only built when there is src/Makevars and neither src/Makefile nor configure * configure: idem * src/Makevars: Again a static file, content copied from Makevars.in, -std=c++0x selection back to simply unabling a comment 2010-01-24 Romain Francois * src/SimpleVector.h : new template to replace simple vector classes. now NumericVector, IntegerVector, LogicalVector, ComplexVector and RawVector are all generated from the same template class. A first attempt at matrix indexing is added as part of this. * inst/unitTests/runit.NumericVector.R: new unit tests about matrix indexing * src/Rcpp/VectorBase.h: added the exception not_a_matrix that is thrown when attempting to perform matrix indexing on a vector that is not a matrix. 2010-01-23 Dirk Eddelbuettel * inst/unitTests/runit.RcppParams.R: added * inst/unitTests/runit.RcppResultSet.R: added 2010-01-23 Romain Francois * src/wrap.cpp: s/copy/std::copy/ * src/RcppDateTime.h: explicitely include (win64 warning) 2010-01-22 Romain Francois * src/Makevars.win: disable c++0x entirely (for now) * src/Rcpp/Environment.h: make sure what() is const. (suncc finding) * src/RcppCommon.h: pre declare classes, as an attempt to deal with the suncc warning "RObject may not have a type qualifier." * src/Rcpp/*.h: make sure RcppCommon.h is the first included header * src/*cpp: make sure foo.cpp only include Rcpp/foo.h * src/Environment.cpp: use Evaluator instead of R_ToplevelExec * src/RcppFunction.{h,cpp}: listen to some suncc warnings * src/RcppFrame.cpp: listen to some suncc warnings * src/as.cpp: use transform instead of assign, which should make the code more portable (particularly suncc) and also deal with coercion 2010-01-21 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.3 * debian/*: Similarly updated for new release to Debian * INDEX: updated * configure.in: Some more small cleanups * inst/skeleton/Makevars.win: Add missing default file 2010-01-21 Romain Francois * configure.in: Some small cleanups, add RCPP_CXX0X env var 2010-01-20 Romain Francois * src/*: make update private virtual in RObject and couple it with setSEXP so that it gets called automatically, instead of manually * src/*: move more code depending on c++0x from cpp files to header files 2010-01-20 Dirk Eddelbuettel * configure.in: Detect C++ capabilties (via g++ major/minor) via small C++ program embedded in autoconf macro 2010-01-19 Romain Francois * configure.in: use the cxx0x.R script to discover if the compiler being used is c++0x capable * configure: regenerated from updated configure.in * src/Makevars.in: using CLINK_CPPFLAGS variable * src/Makevars.win: using CLINK_CPPFLAGS variable with the cxx0x.R discovery script 2010-01-18 Dirk Eddelbuettel * R/RcppLdpath.R: Rewrote logic for LdFlags() to decide when linking is static: default now is everywhere but Linux, and choices can be overriden as before 2010-01-18 Romain Francois * inst/discovery/cxx0x.R: replaces the cxx0x.c file to take care of compiling, etc... 2010-01-17 Romain Francois * src/exceptions.cpp: slightly less dumb exception logic on non GCC compilers. exceptions will now trigger an R error with a default message (we don't attempt to get the exception class or message because we don't know how to) * src/Rcpp/Pairlist.h: Pairlist lacked a default constructor which is needed when the variadic templates are not available * inst/unitTests/*: add -std=c++0x in inline when necessary * R/RcppLdPath.R : new script RcppCxx0xFlags() and Cxx0xFlags() that compile, load and call a simple C file in order to check the compiler version and add the -std=c++0x flag * inst/discovery/cxx0x.c: discovery script. simple C script that returns "-std=c++0x" if it is compiled with GCC >= 4.3 and "" otherwise 2010-01-16 Dirk Eddelbuettel * src/Rcpp/*h: call Rf_length() etc as ::Rf_length() to ensure we get the one from the top-level namespace 2010-01-16 Romain Francois * src/Rcpp/Environment.h: Environment gains a new_child method to create an environment enclosed by this * inst/unitTests/runit.environments.R: unit test for new_child * src/Rcpp/ExpressionVector.h: ExpressionVector gains a convenience methods eval to evaluate itself * inst/unitTests/runit.ExpressionVector.R: added unit tests for ExpressionVector::eval * src/Rcpp/ExpressionVector.h: ExpressionVector gains a constructor ExpressionVector( const std::string& ) that parses the string as R code * inst/unitTests/runit.ExpressionVector.R: added unit tests to cover the new constructor * src/Rcpp/Environment.h : the Rcpp namespace is cached because we use it in many places and retrieving it is an "expensive" operation that requires a round trip to the R side * src/Evaluator.cpp: use the cached Rcpp namespace * R/Rcpp.package.skeleton: now generating example C++ and R code that uses Rcpp, also the generated Makevars contains a hack so that the generated package can pass check (after edition of Rd files, NAMESPACE, etc ...) * inst/skeleton: added example code used by the skeleton generator 2010-01-15 Romain Francois * src/Rcpp/NumericVector.h: cache the start of the array to improve performance of operator[] * src/NumericVector.cpp: idem * src/Rcpp/IntegerVector.h: * src/Rcpp/RawVector.h: * src/Rcpp/ComplexVector.h: * src/Rcpp/LogicalVector.h: idem * src/IntegerVector.cpp: * src/RawVector.cpp: * src/ComplexVector.cpp: * src/LogicalVector.cpp: idem 2010-01-13 Romain Francois * R/cpp.package.skeleton.R: new function cpp.package.skeleton to extend the code generation performed by package.skeleton to Rcpp features * man/cpp.package.skeleton.Rd: documentation for cpp.package.skeleton * src/Rcpp/VectorBase.h: new virtual class Rcpp::VectorBase to manage common things of all vectors (length, names, etc ...) all Vector classes now derive from VectorBase * src/Rcpp/Environment.h: Environment::Binding gains a templated conversion operator, to facilitate distance 2 implicit conversion making this possible: Environment env("package:stats") ; Function f = env["rnorm"] ; * src/Rcpp/GenericVector.h: GenericVector::Proxy gains an assignement operator to deal with Environment::Binding. This is to work around distance 1 implicit conversion restrictions * src/Rcpp/NumericVector.h: operator[], begin and end are promoted to inline member functions * src/Rcpp/IntegerVector.h: idem * src/Rcpp/RawVector.h: idem * src/Rcpp/LogicalVector.h: idem 2010-01-12 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.2 * debian/*: Similarly updated for new release to Debian * .Rbuildignore: Add 'inst/doc/{html,latex,man} as we no longer ship the voluminous doxygen-generated content * inst/doc/examples/ConvolveBenchmarks/convolve2*: Added simple benchmark on the well-known vector convolution example from 'Writing R Extensions' to compare C and C++ implementations * inst/doc/examples/ConvolveBenchmarks/buildAndRun.sh: idem inst/doc/examples/ConvolveBenchmarks/exampleRCode.r: idem 2010-01-12 Romain Francois * inst/doc/examples/ConvolveBenchmarks/convolve2*: Added additional C++ examples to convolution benchmark highlighting performance gains 2010-01-11 Romain Francois * src/Rcpp/CharacterVector.h: StringProxy gains operator+= * src/CharacterVector.cpp: implementation * src/Rcpp/*Vector.h: operator[] now throws index out of bounds exception when needed (FR#770) * src/*Vector.cpp: same * src/Rcpp/Environment.h: operator[](string) for environment allowing to get/set values of a binding in this environment. The Environment::Binding class has been created to act as a proxy. * src/Environment.cpp: idem * inst/unitTests/runit.environments.R: unit tests for the above 2010-01-10 Romain Francois * src/Rcpp/Pairlist.h: operator[] for pairlist using proxies * src/Pairlist.cpp : idem * inst/unitTests/runit.Pairlist.R: new unit tests * src/Rcpp/Language.h: same for Language * src/Language.cpp : idem * inst/unitTests/runit.Language.R: new unit tests * inst/unitTests/runit.Function.R: added unit test for function throwing exceptions * src/Function.cpp: grab the condition message and not the call 2010-01-09 Romain Francois * src/Rcpp/RObject.h: attr can now be used to get or set the attribute (used to be read only). This is another manifestation of the proxy pattern. The rhs can be anything wrap can handle * inst/unitTests/runit.RObject.R: added test.RObject.attr.set unit test (setting attribute). * src/Rcpp/Function.h: Function::operator() now throws an exception if an R error occurs. 2010-01-08 Dirk Eddelbuettel * configure.in: provide basic support for c++ compiler version detection at build-time so that we can add -std=c++0x when applicable; provide defaults in case we do not use g++ * src/Makevars.in: copied from Makevars, set C++ flags from configure * configure.win: simply log what g++ version is being used 2010-01-08 Romain Francois * src/Rcpp/wrap.h: added wrap( size_t ) to disambiguate it * int/unitTests/runit.XPTr.R: forgot to set the finalizer on the external pointer * src/Rcpp/Pairlist.h: Pairlist gains a push_back, replace, length, size, remove and insert methods * src/Rcpp/Language.h: idem for Language 2010-01-07 Romain Francois * src/Rcpp/Pairlist.h: gains a push_front method * src/Rcpp/wrap.h : now the result type of the various wrap functions depends on the parameters. wrap( bool ) makes a LogicalVector, etc ... wrap(SEXP) dispatches to the appropriate Rcpp:: class depending on TYPEOF * src/Rcpp/RObject.h: added methods "isS4", "slot" and "hasSlot" to deal with S4 objects * inst/unitTests/runit.S4.R: unit tests * src/Rcpp/ComplexVector.h: new class Rcpp::ComplexVector to manage ... complex vectors (CPLXSXP) * src/ComplexVector.cpp: implementation * inst/unitTests/runit.ComplexVector.R: unit tests * src/Rcpp/Promise.h: new class Rcpp::Promise to manage promises (PROMSXP). only read access so far (no way to force the promise) * src/Promise.cpp: implementation * src/Rcpp/RObject.h: the result of attr is now an RObject rather than a SEXP. This does not change previous behavior because of the implicit conversion * src/Rcpp/ExpressionVector.h: new class Rcpp::ExpressionVector which shares a lot with GenericVector. * src/ExpressionVector.cpp: implementation * inst/unitTests/runit.ExpressionVector.R: unit tests * src/Rcpp/CharacterVector.h: new class Rcpp::CharacterVector to manage character vectors (STRSXP). StringVector is a convenience typedef equivalent to CharacterVector * src/CharacterVector.cpp: implementation * inst/unitTests/runit.CharacterVector.R: unit tests * src/Rcpp/WeakReference.h: new class Rcpp::WeakReference to wrap WEAKREFSXP with accessors to the key and value * src/WeakReference.cpp: implementation * src/Rcpp/Rcpp_Rinternals.h: borrowed from Rinternals so that we can use VECTOR_PTR (which R forbids unless we define USE_RINTERNALS, but defining it disables NO_R_REMAP) * src/Rcpp/GenericVector.h : added begin and end to allow stl type iteration over generic vectors. Now using the Proxy pattern (from Item 30 of More Effective C++) to allow getting and setting the elements of the list through the operator[]. * int/unitTests/runit.GenericVector.R: examples are reworked using [] where set and get were used. 2010-01-06 Dirk Eddelbuettel * src/RcppCommon.h: Protect definition of logTxt by #ifndef * inst/doc/Rcpp-unitTests.Rnw: Minor LaTeX tweak 2010-01-06 Romain Francois * src/Rcpp/wrap.h : wrap can now use initializer lists (available on on GCC >= 4.4). * src/wrap.cpp: implementation * int/unitTests/runit.wrap.R: unit tests * src/RObject.cpp : make methods RObject::asFoo calling Rcpp::as to avoid code duplication 2010-01-05 Romain Francois * src/Rcpp/GenericVector.h : new class Rcpp::GenericVector and an alias Rcpp::List to handle lists (VECSXP), aka generic vectors * src/GenericVector.cpp : implementation * inst/unitTests/runit.GenericVector.R: unit tests * src/Rcpp/IntegerVector.h : new class Rcpp::IntegerVector to manage integer vector (INTSXP). IntegerVector can be constructed from SEXP of appropriate type, from an int which simply allocates a vector that big, or using an initialization list (the last is GCC >= 4.4 only). Additionally IntegerVector defines begin() and end() so that they can be used in STL algorithms * src/IntegerVector.cpp : implementation * inst/unitTests/runit.IntegerVector.R: unit tests * src/Rcpp/NumericVector.h : same as above, but for numeric vectors (REALSXP) * src/NumericVector.cpp : implementation * inst/unitTests/runit.NumericVector.R: unit tests * src/Rcpp/RawVector.h : same as above, but for numeric vectors (RAWSXP) * src/RawVector.cpp : implementation * inst/unitTests/runit.RawVector.R: unit tests * src/Rcpp/LogicalVector.h : same as above, but for numeric vectors (RAWSXP) * src/LogicalVector.cpp : implementation * inst/unitTests/runit.LogicalVector.R: unit tests * src/RcppCommon.h: improve the conditional compiling logic with macros HAS_VARIADIC_TEMPLATES and HAS_INIT_LISTS instead of CXX0X. This ensures the package can be compiled with older GCC, with lower functionality * src/RcppCommon.{h,cpp}: added a capabilities function that can be used to bring the result of the two above macros to R * R/RcppLdPaths.R: added unexported function RcppCapabilities to call the internal capabilities. capabilities is an alias to RcppCapabilities so that we can call Rcpp::capabilities() 2010-01-04 Romain Francois * src/Rcpp/Function.h: new class Rcpp::Function to manage functions (closures, primitives and builtins) all share the Function class (at least for now). This is implemented as a functor taking variable number of arguments, so it looks pretty similar to the R function * src/Function.cpp: implementation * inst/unitTests/runit.Function.R: unit tests * src/Rcpp/Pairlist.h: new class Rcpp::Pairlist to manage dotted pair lists (LISTSXP). unsurprisingly this shares a lot of similarities with Language class * src/Pairlist.cpp: implementation * inst/unitTests/runit.Pairlist.R: unit tests for Rcpp::Pairlist * src/Rcpp/wrap.h: wrap no more a template. this was not a good idea as it prevented implicit conversion to SEXP behavior when wrap'ing a RObject. * src/Rcpp/Environment.h: added the remove method * src/unitTests/runit.environments.R: remove unit test * src/unitTests/runit.Language.R: remove verbose=TRUE in cfunction call (generated noise) * src/wrap.cpp: added a few missing PROTECT 2010-01-04 Dirk Eddelbuettel * src/excections.cpp: Get rid of another unused variable * src/RcppCommon.cpp: Idem 2010-01-03 Romain Francois * src/Rcpp/Environment.h: Environment gains the parent method that returns the parent environment * src/Rcpp/as.h: template as<> to convert SEXP to classic C++ types, factored out of RObject * src/as.cpp: specific implementations. as, as as, ... * inst/unitTests/runit.as.R: unit tests * src/Rcpp/wrap.h : factored out from RObject. there is now a template wrap in addition to the specific implementations. The template generates a warning and return NULL * src/wrap.cpp: specific implementations of the wrap template (factored out of RObject) * src/Rcpp/pairlist.h : variadic templates to recursively generate a pairlist (CAR and CDR) from any number of "wrap("'able objects. (factored out of Language) * src/pairlist.cpp: end of recursion for the above * src/Rcpp/grow.h : grow a pairlist with any wrappable object. Used in pairlist * src/grow.cpp : specific implementation for Named object to allow tagging the head of the pairlist. * src/Rcpp/Named.h : new class Named that is used to specify named elements in a pairlist. * src/Named.cpp: implementation * src/Rcpp/RObject.h: added wrap(const char* const) RObject factory method * src/Rcpp/RObject.h: rework the garbage collection mechanism so that it is automatic and hidden. methods preserve and release are now private to the RObject class and the SEXP may only be changed using the protected setSEXP member function. isPreserved and forgetPreserve are defunct. * src/Rcpp/RObject.h: RObject gains assignment operators and copy constructors * src/RcppCommon.h: added the CXX0X define that controls whether we can use C++0x features offered by the gcc. currently the define is hardcoded, but this will eventually be a configure guess. The canUseCXX0X function can be called to bring this back to R * R/RcppLdPath.R: added the canUseCXX0X R function to query the internal canUseCXX0X function, use this in RcppCxxFlags so that code linking against Rcpp (inline code or packages) can take advantage of it * src/Rcpp/Language.h : new class Rcpp::Language to manage calls (LANGSXP SEXP) * src/Language.cpp : implementation * inst/unitTests/runit.Language.R: unit tests * src/Rcpp/Environment.h : added constructors and made the SEXP based constructor smarter (using as.environment) * inst/unitTests/runit.environments.R: more unit tests * src/Rcpp/Symbol.h: new class Rcpp::Symbol to encapsulate symbols. This allows to use Symbol("rnorm") instead of the most cryptic Rf_install("rnorm") * src/Symbol.cpp: implementation * inst/unitTests/runit.Symbol.R: unit tests 2010-01-03 Dirk Eddelbuettel * doxyfile: updated to current doxygen standard using -u 2010-01-02 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.1 * debian/*: Similarly updated for new release to Debian 2010-01-02 Romain Francois * pkg/src/RcppSexp.h: Added to preserve existing interface, implementation use the redesigned class src/RObject.h 2010-01-01 Romain Francois * pkg/src/Rcpp/RObject.h: RObject::RObject constructors are replaced by the Rcpp::wrap set of functions. Currently the wrap functions make a RObject object but it is likely that as new classes become available in the new API, wrap will return instances of classes that extend RObject. * pkg/src/Rcpp/RObject.h: s/protect/preserve/, added methods isPreserved and forgetPreserve * ** : adapted examples, code, and unit tests to reflect both above items 2009-12-31 Romain Francois * src/Rcpp/Evaluator.h : new class Rcpp::Evaluator that eases evaluation of R expression with error capture. so that we can for example throw C++ exceptions * src/Evaluator.cpp : implementation of Rcpp::Evaluator * inst/unitTests/runit.evaluator: unit tests of Rcpp::Evaluator * inst/Rcpp/RObject.h: RObject::RObject(SEXP) now initializes isProtected * inst/src/Environment.cpp: use of exceptions 2009-12-30 Romain Francois * src/Rcpp/Environment.h : added support for environment through the Rcpp::Environment class * src/Environment.cpp: idem * inst/unitTests/runit.environments.R: testing the above * src/RcppCommon.h: now includes , needed for the environment support 2009-12-30 Romain Francois * src/Makevars* : adapt for allowong copy of the Rcpp directory * src/Rcpp_RObject.h: replace by src/Rcpp/RObject.h * src/Rcpp_XPtr.h: replaced by src/Rcpp/XPtr.h * src/*.cpp: adapt to the Rcpp directory * cleanup: idem 2009-12-30 Romain Francois * inst/unitTests/runit.RObject.R: new unit tests * inst/unitTests/runit.exceptions.R: idem * inst/unitTests/runit.XPtr.R: idem * man/RcppUnitTests.Rd: shows and link unit test reports generated at build time 2009-12-29 Romain Francois * src/Rcpp_RObject.{h,cpp}: new namespace Rcpp and new class Rcpp::RObject to replace RcppSexp with the same functionality. * src/Rcpp_XPtr.h: replaces RcppXPtr.h and the class is now Rcpp::XPtr<> and extends Rcpp::RObject * inst/examples/RcppInline/external_pointer.r: use the new namespace * inst/examples/RcppInline/RcppInlineWithLibsExamples.r: idem * inst/examples/RcppInline/RcppSexpTests.r: idem * DESCRIPTION: marked as version 0.7.0.5 * inst/doc/*: fake (empty) vignette and unit test trigger * inst/unitTests/*: prepare the space for unit tests * tests/doRUnit.R : added the usual RUnit tests trigger 2009-12-29 Romain Francois * src/RcppXPtr.h: now RcppXPtr extends RcppSexp and RcppSexp manages garbarge collection, attributes, etc ... * src/exceptions.cpp: replaces src/exception_handling.cpp * DESCRIPTION: now suggesting RUnit. 2009-12-29 Romain Francois * src/RcppXPtr.h: added operator SEXP() to class RcppXPtr to ease implicit conversion from RcppXPtr to SEXP. This means we can directly return the RcppXPtr object to R when the return type of the function is SEXP. (no need to explicitely call asSexp anymore) * src/RcppSexp.{h,cpp} : idem 2009-12-29 Romain Francois * src/RcppXPtr.h: new smart external pointer wrapper. The RcppXPtr template can be used to wrap a external pointer (SEXP) so that it looks like the dumb pointer it is wrapping (as far as the * and -> operator are concerned). The template parameter controls the type of object that is wrapped by the pointer. * src/Rcpp.h: importing the RcppXPtr.h header * src/RcppExample.cpp: added an example of RcppXPtr usage * inst/examples/RcppInline/external_pointer.r: added example using the RcppXPtr template * DESCRIPTION: marking this as 0.7.0.4 2009-12-28 Romain Francois * R/exceptions.R: s/uncaught_cpp_exception/cpp_exception/ and added a 'class' argument to hold the class name of the C++ exception (range_error, etc ...) * inst/examples/RcppInline/UncaughtExceptions.r: extend examples to show how to grab details of the C++ exception * src/exception_handling.cpp: factored out from RcppCommon.cpp, now able to grab the class name of the exception and its message. 2009-12-27 Dirk Eddelbuettel * R/RcppInline.R: Removed as we now use cfunction() from inline (>= 0.3.4) * man/{RcppInline,internals}.Rd: idem * NAMESPACE: removed entries related to cfunction and methods * DESCRIPTION: Added 'Suggests: inline (>= 0.3.4) * inst/examples/RcppInline/*R: Add library(inline) or require(inline) 2009-12-27 Romain Francois * src/RcppCommon.{h,cpp} : added experimental uncaught exception management * R/zzz.R : added .onAttach, used to register the uncaught exception management on package attach * R/exceptions.R : added R side of the exception management, unexported as it is only used by internal C++ code * inst/examples/RcppInline/UncaughtExceptions.r: demo of the uncaught exception system * src/RcppSexp.{h,cpp} : added method isNULL to test if the underlying SEXP is NULL * src/RcppSexp.{h,cpp} : added some methods to deal with attributes attributeNames : the names of the attributes as a vector hasAttribute : test whether the SEXP has the given attribute attr : extract the attribute (might return NULL) * src/RcppSexp.{h,cpp} : added RcppSexp(bool), RcppSexp(vector) constructors and RcppSexp.asBool(), RcppSexp.asStdVectorBool() methods * inst/examples/RcppInline/RcppSexpTests.r: examples/tests of the above items 2009-12-26 Romain Francois * src/RcppSexp.{h,cpp} : added std::set<{int,double,Rbyte,string}> as accepted input type for the RcppSexp class (needed by RProtoBuf) * inst/examples/RcppInline/RcppSexpTests.r: examples/tests of the above 2009-12-21 Romain Francois * src/RcppSexp.{h,cpp} : support for raw vector added into RcppSexp * inst/examples/RcppInline/RcppSexpTests.r: examples of raw vector support 2009-12-20 Dirk Eddelbuettel * inst/examples/RcppInline/RcppInlineWithLibsExamples.r: Minor simplifications using new RcppSexp types, added third example 2009-12-19 Dirk Eddelbuettel * DESCRIPTION: Release 0.7.0 * DESCRIPTION: Descrition fields reworded and expanded to explicitly mention 'inlining' ability as well as simple SEXP support. * src/RcppSexp.{h,cpp}: Switch to R_PreserveObject and R_ReleaseObject with a big thanks to Romain for the most appropriate suggestion * src/RcppSexp.{h,cpp}: Added converters for vectors of int, double, and std::string vectors * src/RcppResultsSetp.{h,cpp}: Added simple single SEXP return * src/RcppCommon.{h,cpp}: Adding simple logging facility * inst/examples/RcppInline/RcppSexpTests.r: expanded for new types 2009-12-18 Dirk Eddelbuettel * R/RcppInline.R: Another improvement for Rcpp use * inst/examples/RcppInline/RcppSimpleExamples.r: Another simple case 2009-12-17 Dirk Eddelbuettel * R/RcppInline.R: Improved / simplified in light of getting it to work on Windoze too so switched to setting env var explicitly; also split into three args for CPPFLAGS, CXXFLAGS and LIBS * man/RcppInline.Rd: Updated accordingly to reflect new args * inst/examples/RcppInline/RcppInlineWithLibsExamples.r: Idem 2009-12-16 Dirk Eddelbuettel * src/RcppSexp.{h,cpp}: Added simple RcppSexp class for simple conversion from and to single-element SEXPs -- currently limited to int, double, std::string * inst/examples/RcppInline/RcppSexpTests.r: Simple tests for this 2009-12-15 Dirk Eddelbuettel * DESCRIPTION: License changed to 'GPL (>= 2)' * COPYING: Changed from LGPL 2.1 to GPL 2 (or later) * src/*.{h,cpp}: Relicensed under GPL 2 (or later) 2009-12-13 Dirk Eddelbuettel * R/RcppInline.R: Extended to for additional header and library arguments so that we can work with arbitrary other projects * man/RcppInline.Rd: Added documentation for these arguments * inst/examples/RcppInline/RcppInlineWithLibsExamples.r: New examples using GNU GSL to show how to compile + link via inline 2009-12-11 Dirk Eddelbuettel * R/RcppInline.R: Imported function 'cfunction' from the inline package, along with small patch to directly support Rcpp. The inclusion may be temporary -- if our patch is integrated into inline we may just depend on that package * man/RcppInline.Rd: Imported from inline, plus change for Rcpp * inst/examples/RcppInline/RcppInlineExample.r: Small example taken from the 'Intro to HPC with R' tutorials * R/RcppVersion.R: Removed as unused as redundant given read.dcf() in R * man/RcppVersion.R: idem * NAMESPACE: updated accordingly * INDEX: idem 2009-11-18 Dirk Eddelbuettel * DESCRIPTION: Add Dominick back into Authors per his new request reversing his requests to be removed from last December 2009-11-17 Dirk Eddelbuettel * man/RcppParams.Rd: applied patch by Frank S. Thomas to fix example 2009-11-15 Dirk Eddelbuettel * src/RcppDateVector.{cpp,h}: Moved out of Rcpp.{h,cpp} * src/RcppDatetimeVector.{cpp,h}: idem * src/RcppFunction.{cpp,h}: idem * src/RcppMatrix.{cpp,h}: idem * src/RcppMatrixView.{cpp,h}: idem * src/RcppNumList.{cpp,h}: idem * src/RcppResultSet.{cpp,h}: idem * src/RcppStringVector.{cpp,h}: idem * src/RcppStringVectorView.{cpp,h}: idem * src/RcppVector.{cpp,h}: idem * src/RcppVectorView.{cpp,h}: idem * src/RcppCommon.cpp: takes remaining utility function from Rcpp.cpp 2009-11-09 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.8 * src/RcppParams.{cpp,h}: Code reorginsation, moved out of Rcpp.{h,cpp} * src/RcppDate.{cpp,h}: idem * src/RcppDatetime.{cpp,h}: idem * src/RcppCommon.h: New header file for common defines and includes * src/Makevars{,.win}: Updated and generalised to reflect new files 2009-11-08 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.7 * man/RcppVector.Rd: Remove erraneous use of \R in \title{} section noticed by the Rd parser in R-devel (with thanks to Kurt Hornik) 2009-11-06 Dirk Eddelbuettel * src/RcppList.{h,cpp}: Added a simple class to accept list() objects in order to cope with non-rectangular data-types -- this comes from the RProtoBuf code currently only on r-forge where we need accept lists that are potentially nested. The API for RcppList is not fully fleshed out and needs a few more append() member functions. Also length is currently fixed. * cleanup: Change header file removal to Rcpp*.h * inst/README: Added short README about history and status * inst/doc/: Updated doxygen documentation 2009-09-29 Dirk Eddelbuettel * inst/examples/functionCallback/*: Added simple C++ / R example of defining an R function that is passed to and called from C++ 2009-08-03 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.6 * src/Rcpp.{h,cpp}: Added exists() method for RcppParams to test for existence of a named parameter. * inst/doc/: Updated doxygen documentation 2009-04-01 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.5 * COPYING: Added 2009-03-30 Dirk Eddelbuettel * src/Makevars: Add $(R_ARCH) to target directory path when copying the header file as an OS X user reported not finding it with default settings. 2009-03-01 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.4 * .Rbuildignore: Added to exclude debian/ from source tarball 2009-02-25 Dirk Eddelbuettel * src/Makevars.win: Renamed from Makefile.win, added missing mkdir * cleanup: Remove a few more Windows files 2009-02-24 Dirk Eddelbuettel * inst/doc/{html,latex,man}: Added new documentation of the C++ classes * doxyfile: Added Doxygen configuration file for doc generation 2009-02-22 Dirk Eddelbuettel * src/Rcpp.{h,cpp}: cleaner use of namespace 'std' by formal prefix rather than via 'using namespace std' * src/Rcpp.h: define R_NO_MAP and use Rf_* form of R API functions 2009-02-18 Dirk Eddelbuettel * src/Rcpp.{h,cpp}: Added a few explicit casts, and removed unused loop variable; all to make 'g++ -Wall' happy 2009-02-10 Dirk Eddelbuettel * src/Rcpp.{cpp,h}: Expanded a few of the throw() messages 2009-01-09 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.3 * R/RcppLdpath.R: Also defined shorter functions CxxFlags() and LdFlags() which cat() the longer forms RcppCxxFlags() and RcppLdFlags() to further simplify use via litter or Rscript in Makefile or Makevars * man/Rcpp-package.Rd: Mention short form CxxFlags() and LdFlags() * src/Makevars: Applied another build correction for OS X suggested by Simon Urbanek * src/Rcpp.{cpp,h}: Added 'view-only' classes RcppVectorView, RcppMatrixView and RcppStringVectorView contributed by David Reiss 2008-12-02 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.2 * R/RcppLdPath.R: Correct output for the default Linux case 2008-11-30 Dirk Eddelbuettel * DESCRIPTION: Release 0.6.1 * src/Makevars: Added, replacing src/Makefile: thanks to Simon for a rewrite that provides OS X support * src/Makefile: Retired * src/Makefile.win: Now build libRcpp.a instead of Rcpp.a * src/Rcpp.{cpp,h}: Removed #ifdef statements related to QuantLib and Date ops as we no longer need to split this off -- one build for all uses; also added another date offset for the difference between the Unix epoch of Jan 1, 1970 and what certain spreadsheets use (which is what QuantLib) follows. With this change, Rcpp is completely decoupled from QuantLib headers, yet can be used from QuantLib 0.2.10 or later. However, this also removes data conversion from R/Rcpp to QL as Rcpp no longer 'knows' QL. * R/RcppLdPath.R: Adds new functions RcppLdPath() to return lib/ directory path, and RcppLdFlags() to return arguments, including the optional rpath settings on Linux * R/RcppExample.R: Added new example 'RcppVectorExample()', extended default print method for examples * man/Rcpp-package.Rd: Expanded / updated documentation of package use when building other packages * cleanup: Removing static libraries too but do not remove src/Makevars 2008-11-05 Dirk Eddelbuettel * Release 0.6.0 * New maintainer * src/Makefile{,.win}: New files, including functionality from both configure and RcppSrc/Makefile; we now build two libraries, one for use by the package which also runs the example, and one for users to link against * src/Makevars.in: Removed * src/Rcpp.{cpp,h}: moved in from ../RcppSrc * src/Rcpp.{cpp,h}: Add new type RcppDatetime corresponding to POSIXct in with full support for microsecond time resolution between R and C++ * man/*: Several new manual pages added * configure{,.in,.win}: Removed as src/Makefile* can handle this more easily * DESCRIPTION: Minor cleanup and reformatting, Date: now uses svn:keyword Date property * NAMESPACE: Renamed RcppTemplateVersion to RcppVersion, deleted RcppDemo * demo/ directory removed as vignette("RcppAPI") is easier and more reliable to show vignette documentation * R/zzz.R: RcppTemplateDemo() removed, vignette("RcppAPI") is easier * man/RcppTemplateDemo.Rd removed as well * R/RcppExample.R: reindented, rewritten to set default arguments * R/RcppTemplateVersion.R: renamed to RcppVersion.R * man/RcppTemplateVersion.Rd: renamed to RcppVersion.Rd * RcppSrc/Rcpp.{cpp,h}: moved to src/ directory * RcppSrc/Makefile{,.win}: removed * inst/doc/RcppAPI.{Rnw,pdf}: Added footnote onto titlepage about how this document has not (yet) been updated along with the channges made