https://github.com/RadioAstronomySoftwareGroup/pyuvdata
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Tip revision: 573d5c7129e32692fb9e03342eb2561dcaa81384 authored by Matthew Kolopanis on 21 October 2021, 16:17 UTC
Let miriad be more flexible with complex types; typo fix
Tip revision: 573d5c7
conftest.py
# -*- mode: python; coding: utf-8 -*-
# Copyright (c) 2019 Radio Astronomy Software Group
# Licensed under the 2-clause BSD License

"""Testing environment setup and teardown for pytest."""
import os

import pytest
from astropy.utils import iers
from astropy.time import Time
from astropy.coordinates import EarthLocation
import numpy as np

from pyuvdata.data import DATA_PATH
from pyuvdata import UVData, UVBeam
import pyuvdata.tests as uvtest
from pyuvdata.uvdata.mir import mir_parser

filenames = ["HERA_NicCST_150MHz.txt", "HERA_NicCST_123MHz.txt"]
cst_folder = "NicCSTbeams"
cst_files = [os.path.join(DATA_PATH, cst_folder, f) for f in filenames]
casa_tutorial_uvfits = os.path.join(
    DATA_PATH, "day2_TDEM0003_10s_norx_1src_1spw.uvfits"
)
paper_miriad_file = os.path.join(DATA_PATH, "zen.2456865.60537.xy.uvcRREAA")


@pytest.fixture(autouse=True, scope="session")
def setup_and_teardown_package():
    """Handle possible IERS issues."""
    # Do a calculation that requires a current IERS table. This will trigger
    # automatic downloading of the IERS table if needed, including trying the
    # mirror site in python 3 (but won't redownload if a current one exists).
    # If there's not a current IERS table and it can't be downloaded, turn off
    # auto downloading for the tests and turn it back on once all tests are
    # completed (done by extending auto_max_age).
    # Also, the check_warnings function will ignore IERS-related warnings.
    try:
        t1 = Time.now()
        t1.ut1
    except (Exception):
        iers.conf.auto_max_age = None

    # Also ensure that we're downloading the site data from astropy
    EarthLocation._get_site_registry(force_download=True)

    yield

    iers.conf.auto_max_age = 30


@pytest.fixture(scope="session")
def casa_uvfits_main():
    """Read in CASA tutorial uvfits file."""
    uv_in = UVData()
    with uvtest.check_warnings(
        UserWarning,
        [
            "Telescope EVLA is not in known_telescopes",
            "The uvw_array does not match the expected values",
        ],
    ):
        uv_in.read(casa_tutorial_uvfits)

    return uv_in


@pytest.fixture(scope="function")
def casa_uvfits(casa_uvfits_main):
    """Make function level CASA tutorial uvfits object."""
    casa_uvfits = casa_uvfits_main.copy()
    yield casa_uvfits

    # clean up when done
    del casa_uvfits

    return


@pytest.fixture(scope="session")
def paper_miriad_main():
    """Read in PAPER miriad file."""
    pytest.importorskip("pyuvdata.uvdata.aipy_extracts")
    uv_in = UVData()
    uv_in.read(paper_miriad_file)

    return uv_in


@pytest.fixture(scope="function")
def paper_miriad(paper_miriad_main):
    """Make function level PAPER miriad object."""
    uv_in = paper_miriad_main.copy()

    yield uv_in

    # cleanup
    del uv_in


def make_cst_beam(beam_type, nfreq):
    """Make the default CST testing beam."""
    extra_keywords = {
        "software": "CST 2016",
        "sim_type": "E-farfield",
        "layout": "1 antenna",
        "port_num": 1,
    }

    beam = UVBeam()
    beam.read_cst_beam(
        cst_files,
        beam_type=beam_type,
        frequency=[150e6, 123e6],
        telescope_name="HERA",
        feed_name="Dipole",
        feed_version="1.0",
        feed_pol=["x"],
        model_name="Dipole - Rigging height 4.9 m",
        model_version="1.0",
        x_orientation="east",
        reference_impedance=100,
        history=(
            "Derived from https://github.com/Nicolas-Fagnoni/Simulations."
            "\nOnly 2 files included to keep test data volume low."
        ),
        extra_keywords=extra_keywords,
    )
    return beam


def cut_beam(beam):
    """Downselect a beam to a small sky area to speed tests up."""
    za_max = np.deg2rad(10.0)
    za_inds_use = np.nonzero(beam.axis2_array <= za_max)[0]
    beam.select(axis2_inds=za_inds_use)
    return beam


def single_freq_version(beam):
    """Make a single freq version with expected history."""
    history_use = beam.history[: beam.history.find(" Combined data")]
    beam.select(freq_chans=1)
    beam.history = history_use
    return beam


@pytest.fixture(scope="session")
def cst_efield_2freq_main():
    """Make session level 2-freq efield beam."""
    return make_cst_beam("efield", 2)


@pytest.fixture(scope="function")
def cst_efield_2freq(cst_efield_2freq_main):
    """Make function level 2-freq efield beam."""
    return cst_efield_2freq_main.copy()


@pytest.fixture(scope="session")
def cst_efield_2freq_cut_main(cst_efield_2freq_main):
    """Make session level cut down 2-freq efield beam."""
    return cut_beam(cst_efield_2freq_main.copy())


@pytest.fixture(scope="function")
def cst_efield_2freq_cut(cst_efield_2freq_cut_main):
    """Make function level cut down 2-freq efield beam."""
    return cst_efield_2freq_cut_main.copy()


@pytest.fixture(scope="session")
def cst_efield_2freq_cut_healpix_main(cst_efield_2freq_cut_main):
    """Make session level cut down HEALPix 2-freq efield beam."""
    pytest.importorskip("astropy_healpix")
    beam = cst_efield_2freq_cut_main.copy()
    beam.interpolation_function = "az_za_simple"
    beam.to_healpix()
    return beam


@pytest.fixture(scope="function")
def cst_efield_2freq_cut_healpix(cst_efield_2freq_cut_healpix_main):
    """Make function level cut down HEALPix 2-freq efield beam."""
    return cst_efield_2freq_cut_healpix_main.copy()


@pytest.fixture(scope="session")
def cst_efield_1freq_main(cst_efield_2freq_main):
    """Make session level single freq efield beam."""
    return single_freq_version(cst_efield_2freq_main.copy())


@pytest.fixture(scope="function")
def cst_efield_1freq(cst_efield_1freq_main):
    """Make function level single freq efield beam."""
    return cst_efield_1freq_main.copy()


@pytest.fixture(scope="session")
def cst_efield_1freq_cut_main(cst_efield_2freq_cut_main):
    """Make session level cut down single freq efield beam."""
    return single_freq_version(cst_efield_2freq_cut_main.copy())


@pytest.fixture(scope="function")
def cst_efield_1freq_cut(cst_efield_1freq_cut_main):
    """Make function level cut down single freq efield beam."""
    return cst_efield_1freq_cut_main.copy()


@pytest.fixture(scope="session")
def cst_efield_1freq_cut_healpix_main(cst_efield_2freq_cut_healpix_main):
    """Make session level HEALPix cut down single freq efield beam."""
    return single_freq_version(cst_efield_2freq_cut_healpix_main.copy())


@pytest.fixture(scope="function")
def cst_efield_1freq_cut_healpix(cst_efield_1freq_cut_healpix_main):
    """Make function level HEALPix cut down single freq efield beam."""
    return cst_efield_1freq_cut_healpix_main.copy()


@pytest.fixture(scope="session")
def cst_power_2freq_main():
    """Make session level 2-freq power beam."""
    return make_cst_beam("power", 2)


@pytest.fixture(scope="function")
def cst_power_2freq(cst_power_2freq_main):
    """Make function level 2-freq efield beam."""
    return cst_power_2freq_main.copy()


@pytest.fixture(scope="session")
def cst_power_2freq_cut_main(cst_power_2freq_main):
    """Make session level cut down 2-freq power beam."""
    return cut_beam(cst_power_2freq_main.copy())


@pytest.fixture(scope="function")
def cst_power_2freq_cut(cst_power_2freq_cut_main):
    """Make function level cut down 2-freq power beam."""
    return cst_power_2freq_cut_main.copy()


@pytest.fixture(scope="session")
def cst_power_2freq_cut_healpix_main(cst_power_2freq_cut_main):
    """Make session level HEALPix cut down 2-freq power beam."""
    pytest.importorskip("astropy_healpix")
    beam = cst_power_2freq_cut_main.copy()
    beam.interpolation_function = "az_za_simple"
    beam.to_healpix()
    return beam


@pytest.fixture(scope="function")
def cst_power_2freq_cut_healpix(cst_power_2freq_cut_healpix_main):
    """Make function level HEALPix cut down 2-freq power beam."""
    return cst_power_2freq_cut_healpix_main.copy()


@pytest.fixture(scope="session")
def cst_power_1freq_main(cst_power_2freq_main):
    """Make session level single freq power beam."""
    return single_freq_version(cst_power_2freq_main.copy())


@pytest.fixture(scope="function")
def cst_power_1freq(cst_power_1freq_main):
    """Make function level single freq power beam."""
    return cst_power_1freq_main.copy()


@pytest.fixture(scope="session")
def cst_power_1freq_cut_main(cst_power_2freq_cut_main):
    """Make session level cut down single freq power beam."""
    return single_freq_version(cst_power_2freq_cut_main.copy())


@pytest.fixture(scope="function")
def cst_power_1freq_cut(cst_power_1freq_cut_main):
    """Make function level cut down single freq power beam."""
    return cst_power_1freq_cut_main.copy()


@pytest.fixture(scope="session")
def cst_power_1freq_cut_healpix_main(cst_power_2freq_cut_healpix_main):
    """Make session level HEALPix cut down single freq power beam."""
    return single_freq_version(cst_power_2freq_cut_healpix_main.copy())


@pytest.fixture(scope="function")
def cst_power_1freq_cut_healpix(cst_power_1freq_cut_healpix_main):
    """Make function level HEALPix cut down single freq power beam."""
    return cst_power_1freq_cut_healpix_main.copy()


@pytest.fixture(params=[True, False])
def mir_data_object(request):
    """Make MIR data object for tests. Param to read autocorr data."""
    has_auto = request.param
    testfile = os.path.join(DATA_PATH, "sma_test.mir")
    mir_data = mir_parser.MirParser(
        testfile, load_vis=True, load_raw=True, load_auto=True, has_auto=has_auto
    )

    yield mir_data

    # cleanup
    del mir_data
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