https://github.com/RadioAstronomySoftwareGroup/pyuvdata
Tip revision: 9e003eedd5f69c466b0634d99dc952c1781ad2b7 authored by Adam Beardsley on 15 May 2017, 21:54:19 UTC
write uvfits group data as 64bit
write uvfits group data as 64bit
Tip revision: 9e003ee
uvbase.py
"""
Base class for objects with UVParameter attributes.
Subclassed by UVData and Telescope.
"""
import numpy as np
import parameter as uvp
import warnings
def _warning(msg, *a):
"""Improve the printing of user warnings."""
return str(msg) + '\n'
class UVBase(object):
"""
Base class for objects with UVParameter attributes.
This class is intended to be subclassed and its init method should be
called in the subclass init after all associated UVParameter attributes are
defined. The init method of this base class creates properties
(named using UVParameter.name) from all the UVParameter attributes on the subclass.
AngleParameter and LocationParameter attributes also have extra convenience
properties defined:\n
AngleParameter:\n
UVParameter.name+'_degrees'\n
LocationParameter:\n
UVParameter.name+'_lat_lon_alt'\n
UVParameter.name+'_lat_lon_alt_degrees'
"""
def __init__(self):
"""Create properties from UVParameter attributes."""
warnings.formatwarning = _warning
# set any UVParameter attributes to be properties
for p in self:
this_param = getattr(self, p)
attr_name = this_param.name
setattr(self.__class__, attr_name, property(self.prop_fget(p),
self.prop_fset(p)))
if isinstance(this_param, uvp.AngleParameter):
setattr(self.__class__, attr_name + '_degrees',
property(self.degree_prop_fget(p), self.degree_prop_fset(p)))
elif isinstance(this_param, uvp.LocationParameter):
setattr(self.__class__, attr_name + '_lat_lon_alt',
property(self.lat_lon_alt_prop_fget(p),
self.lat_lon_alt_prop_fset(p)))
setattr(self.__class__, attr_name + '_lat_lon_alt_degrees',
property(self.lat_lon_alt_degrees_prop_fget(p),
self.lat_lon_alt_degrees_prop_fset(p)))
def prop_fget(self, param_name):
"""Getter method for UVParameter properties."""
def fget(self):
this_param = getattr(self, param_name)
return this_param.value
return fget
def prop_fset(self, param_name):
"""Setter method for UVParameter properties."""
def fset(self, value):
this_param = getattr(self, param_name)
this_param.value = value
setattr(self, param_name, this_param)
return fset
def degree_prop_fget(self, param_name):
"""Degree getter method for AngleParameter properties."""
def fget(self):
this_param = getattr(self, param_name)
return this_param.degrees()
return fget
def degree_prop_fset(self, param_name):
"""Degree setter method for AngleParameter properties."""
def fset(self, value):
this_param = getattr(self, param_name)
this_param.set_degrees(value)
setattr(self, param_name, this_param)
return fset
def lat_lon_alt_prop_fget(self, param_name):
"""Lat/lon/alt getter method for LocationParameter properties."""
def fget(self):
this_param = getattr(self, param_name)
return this_param.lat_lon_alt()
return fget
def lat_lon_alt_prop_fset(self, param_name):
"""Lat/lon/alt setter method for LocationParameter properties."""
def fset(self, value):
this_param = getattr(self, param_name)
this_param.set_lat_lon_alt(value)
setattr(self, param_name, this_param)
return fset
def lat_lon_alt_degrees_prop_fget(self, param_name):
"""Lat/lon/alt degree getter method for LocationParameter properties."""
def fget(self):
this_param = getattr(self, param_name)
return this_param.lat_lon_alt_degrees()
return fget
def lat_lon_alt_degrees_prop_fset(self, param_name):
"""Lat/lon/alt degree setter method for LocationParameter properties."""
def fset(self, value):
this_param = getattr(self, param_name)
this_param.set_lat_lon_alt_degrees(value)
setattr(self, param_name, this_param)
return fset
def __iter__(self):
"""Iterator for all UVParameter attributes."""
attribute_list = [a for a in dir(self) if not a.startswith('__') and
not callable(getattr(self, a))]
param_list = []
for a in attribute_list:
attr = getattr(self, a)
if isinstance(attr, uvp.UVParameter):
param_list.append(a)
for a in param_list:
yield a
def required(self):
"""Iterator for all required UVParameter attributes."""
attribute_list = [a for a in dir(self) if not a.startswith('__') and
not callable(getattr(self, a))]
required_list = []
for a in attribute_list:
attr = getattr(self, a)
if isinstance(attr, uvp.UVParameter):
if attr.required:
required_list.append(a)
for a in required_list:
yield a
def extra(self):
"""Iterator for all non-required UVParameter attributes."""
attribute_list = [a for a in dir(self) if not a.startswith('__') and
not callable(getattr(self, a))]
extra_list = []
for a in attribute_list:
attr = getattr(self, a)
if isinstance(attr, uvp.UVParameter):
if not attr.required:
extra_list.append(a)
for a in extra_list:
yield a
def __eq__(self, other):
"""Equal if classes match and required parameters are equal."""
if isinstance(other, self.__class__):
# only check that required parameters are identical
self_required = []
other_required = []
for p in self.required():
self_required.append(p)
for p in other.required():
other_required.append(p)
if set(self_required) != set(other_required):
print('Sets of required parameters do not match. Left is {lset},'
' right is {rset}'.format(lset=self_required,
rset=other_required))
return False
p_equal = True
for p in self.required():
self_param = getattr(self, p)
other_param = getattr(other, p)
if self_param != other_param:
p_equal = False
return p_equal
else:
print('Classes do not match')
return False
def __ne__(self, other):
"""Not equal."""
return not self.__eq__(other)
def check(self, run_check_acceptability=True):
"""
Check that all required parameters are set reasonably.
Check that required parameters exist and have appropriate shapes.
Optionally check if the values are acceptable.
Args:
run_check_acceptability: Option to check if values in required parameters
are acceptable. Default is True.
"""
for p in self.required():
param = getattr(self, p)
# Check required parameter exists
if param.value is None:
raise ValueError('Required UVParameter ' + p +
' has not been set.')
# Check required parameter shape
eshape = param.expected_shape(self)
if eshape is None:
raise ValueError('Required UVParameter ' + p +
' expected shape is not defined.')
elif eshape == 'str':
# Check that it's a string
if not isinstance(param.value, str):
raise ValueError('UVParameter ' + p + 'expected to be '
'string, but is not')
else:
# Check the shape of the parameter value. Note that np.shape
# returns an empty tuple for single numbers. eshape should do the same.
if not np.shape(param.value) == eshape:
raise ValueError('UVParameter {param} is not expected shape. '
'Parameter shape is {pshape}, expected shape is '
'{eshape}.'.format(param=p, pshape=np.shape(param.value),
eshape=eshape))
if eshape == ():
# Single element
if not isinstance(param.value, param.expected_type):
raise ValueError('UVParameter ' + p + ' is not the appropriate'
' type. Is: ' + str(type(param.value)) +
'. Should be: ' + str(param.expected_type))
else:
if isinstance(param.value, list):
# List needs to be handled differently than array
# list values may be different types, so they all need to be checked
for item in param.value:
if not isinstance(item, param.expected_type):
raise ValueError('UVParameter ' + p + ' is not the'
' appropriate type. Is: ' +
str(type(param.value[0])) + '. Should'
' be: ' + str(param.expected_type))
else:
# Array
if not isinstance(param.value.item(0), param.expected_type):
raise ValueError('UVParameter ' + p + ' is not the appropriate'
' type. Is: ' + str(param.value.dtype) +
'. Should be: ' + str(param.expected_type))
if run_check_acceptability:
accept, message = param.check_acceptability()
if not accept:
raise ValueError('UVParameter ' + p + ' has unacceptable values. ' +
message)
return True