if (require("rstanarm") && suppressPackageStartupMessages(require("bayestestR", quietly = TRUE)) && require("testthat") && require("emmeans")) { test_that("si.numeric", { set.seed(333) prior <- distribution_normal(1000, mean = 0, sd = 1) posterior <- distribution_normal(1000, mean = .5, sd = .3) res <- si(posterior, prior) expect_equal(res$CI_low, 0.03999124, tolerance = 0.02) expect_equal(res$CI_high, 1.053103, tolerance = 0.02) expect_s3_class(res, c("bayestestR_si")) res <- si(posterior, prior, BF = 3) expect_equal(res$CI_low, 0.333, tolerance = 0.02) expect_equal(res$CI_high, 0.759, tolerance = 0.02) res <- si(posterior, prior, BF = 100) expect_true(all(is.na(res$CI_low))) expect_true(all(is.na(res$CI_high))) res <- si(posterior, prior, BF = c(1 / 3, 1, 3)) expect_equal(res$CI, c(1 / 3, 1, 3), tolerance = 0.02) expect_equal(res$CI_low, c(-0.119, 0.039, 0.333), tolerance = 0.02) expect_equal(res$CI_high, c(1.213, 1.053, 0.759), tolerance = 0.02) }) test_that("si.rstanarm", { skip_on_cran() data(sleep) contrasts(sleep$group) <- contr.orthonorm # See vignette stan_model <- stan_lmer(extra ~ group + (1 | ID), data = sleep, refresh = 0) set.seed(333) stan_model_p <- update(stan_model, prior_PD = TRUE) res1 <- si(stan_model, stan_model_p, verbose = FALSE) set.seed(333) res2 <- si(stan_model, verbose = FALSE) expect_s3_class(res1, c("bayestestR_si")) expect_equal(res1, res2) set.seed(123) group_diff <- pairs(emmeans(stan_model, ~group)) res3 <- si(group_diff, prior = stan_model) expect_equal(res3$CI_low, -2.746, tolerance = 0.3) expect_equal(res3$CI_high, -0.4, tolerance = 0.3) }) }