https://github.com/vejnar/LabxPipe
Tip revision: bc03eab16d6c4d9acabc64d92ac40100bfe0dd3f authored by vejnar on 29 September 2022, 12:04:21 UTC
Update README
Update README
Tip revision: bc03eab
labxpipe.json
{
"path_seq_run": "/plus/data/seq/by_run",
"path_seq_raw": "/plus/data/seq/raw",
"path_seq_prepared": "/plus/data/seq/prepared",
"ref_info_source": ["db"],
"path_annots": "/plus/data/sai/annots",
"fastq_exts": [".txt.gz", ".txt.lz4", ".fastq", ".fastq.gz", ".fastq.lz4", ".fastq.zst"],
"adaptors": {
"sRNA 1.0": "TCGTATGCCGTCTTCTGCTTGT",
"sRNA 1.5": "ATCTCGTATGCCGTCTTCTGCTTG",
"sRNA alt1": "CTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTG",
"TruSeq Index": "AGATCGGAAGAGCACACGTCTGAA",
"TruSeq-DMS Index": "CTGTAGGCACCATCAATAGATCGGAAGAGCACACGTCTGAA",
"TruSeq-DMS+A Index": "ACTGTAGGCACCATCAATAGATCGGAAGAGCACACGTCTGAA",
"TruSeq Universal": "AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT",
"TruSeq D501 Index": "AATGATACGGCGACCACCGAGATCTACACTATAGCCTACACTCTTTCCCTACACGACGCTCTTCCGATCT",
"BL1 3' Non-multiplex": "CTGTAGGCACCATCAAT",
"Solexa P3": "AGATCGGAAGAGCGGTTCAGCAGGAATGCC",
"QuantSeq Fwd Index": "GATCGGAAGAGCACACGTCTGAACTCCAGTCAC"
}
}