https://github.com/lbbe-software/DRomics
Tip revision: d9c4266df7cc3420bb48e0eeda3d090d368b05e2 authored by Marie-laure DELIGNETTE-MULLER on 24 July 2019, 15:48:27 UTC
Add of the possibility to plot residuals instead of fitted curves from an object of class drcfit
Add of the possibility to plot residuals instead of fitted curves from an object of class drcfit
Tip revision: d9c4266
NAMESPACE
### Imports
import(stats)
import(graphics)
import(ggplot2)
importFrom("limma", normalizeBetweenArrays, lmFit, eBayes, topTable)
importFrom("DESeq2", rlog, vst, DESeq, results, DESeqDataSetFromMatrix)
importFrom("utils", txtProgressBar, setTxtProgressBar, read.table)
importFrom("grDevices", pdf, dev.off)
### Exports
#microarraydata class
export(microarraydata)
export(omicdata) # deprecated function
S3method(print, microarraydata)
S3method(plot, microarraydata)
#RNAseqdata class
export(RNAseqdata)
S3method(print, RNAseqdata)
S3method(plot, RNAseqdata)
#metabolomicdata class
export(metabolomicdata)
S3method(print, metabolomicdata)
S3method(plot, metabolomicdata)
#itemselect class
export(itemselect)
S3method(print, itemselect)
#drcfit class
export(drcfit)
S3method(print, drcfit)
S3method(plot, drcfit)
#bmdcalc class
export(bmdcalc)
S3method(print, bmdcalc)
S3method(plot, bmdcalc)
#bmdboot class
export(bmdboot)
S3method(print, bmdboot)
S3method(plot, bmdboot)
export(ecdfplotwithCI)
export(curvesplot)