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https://github.com/lotusnprod/lotus-processor
27 April 2022, 15:51:22 UTC
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  • paths.mk
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Tip revision: 78e6065d8eb9d0b0d11c2ea8de6ac66b445bca0e authored by Adafede on 26 April 2022, 14:26:24 UTC
update expectations
Tip revision: 78e6065
paths.mk

export INTERIM_PATH = ${DATA_PATH}/interim
export EXTERNAL_PATH = ${DATA_PATH}/external
export PROCESSED_PATH = ${DATA_PATH}/processed
export VALIDATION_PATH = ${DATA_PATH}/validation

export EXTERNAL_DB_SOURCE_PATH = ${EXTERNAL_PATH}/dbSource
export EXTERNAL_DICTIONARY_SOURCE_PATH = ${EXTERNAL_PATH}/dictionarySource
export EXTERNAL_TAXONOMY_SOURCE_PATH = ${EXTERNAL_PATH}/taxonomySource
export EXTERNAL_TRANSLATION_SOURCE_PATH = ${EXTERNAL_PATH}/translationSource
export INTERIM_DICTIONARY_PATH_FIX = ${EXTERNAL_PATH}/dictionarySource

export INTERIM_DB_PATH = ${INTERIM_PATH}/db
export INTERIM_TABLE_PATH = ${INTERIM_PATH}/tables_${MODE}
export INTERIM_DICTIONARY_PATH = ${INTERIM_PATH}/dictionaries_${MODE}
export INTERIM_DICTIONARY_TEST_PATH = ${INTERIM_PATH}/dictionaries_test

export INTERIM_TABLE_ORIGINAL_PATH = ${INTERIM_TABLE_PATH}/0_original
export INTERIM_TABLE_ORIGINAL_STRUCTURE_PATH = ${INTERIM_TABLE_ORIGINAL_PATH}/structure
export INTERIM_TABLE_ORIGINAL_ORGANISM_PATH = ${INTERIM_TABLE_ORIGINAL_PATH}/organism
export INTERIM_TABLE_ORIGINAL_REFERENCE_PATH = ${INTERIM_TABLE_ORIGINAL_PATH}/reference
export INTERIM_TABLE_TRANSLATED_PATH = ${INTERIM_TABLE_PATH}/1_translated
export INTERIM_TABLE_TRANSLATED_STRUCTURE_PATH = ${INTERIM_TABLE_TRANSLATED_PATH}/structure
export INTERIM_TABLE_TRANSLATED_ORGANISM_PATH = ${INTERIM_TABLE_TRANSLATED_PATH}/organism
export INTERIM_TABLE_TRANSLATED_REFERENCE_PATH = ${INTERIM_TABLE_TRANSLATED_PATH}/reference
export INTERIM_TABLE_PROCESSED_PATH = ${INTERIM_TABLE_PATH}/2_processed
export INTERIM_TABLE_PROCESSED_STRUCTURE_PATH = ${INTERIM_TABLE_PROCESSED_PATH}/structure
export INTERIM_TABLE_PROCESSED_ORGANISM_PATH = ${INTERIM_TABLE_PROCESSED_PATH}/organism
export INTERIM_TABLE_PROCESSED_REFERENCE_PATH = ${INTERIM_TABLE_PROCESSED_PATH}/reference
export INTERIM_TABLE_CURATED_PATH = ${INTERIM_TABLE_PATH}/3_curated
export INTERIM_TABLE_ANALYSED_PATH = ${INTERIM_TABLE_PATH}/4_analyzed

export SRC_GATHERING_PATH = ${SRC_PATH}/1_gathering
export SRC_GATHERING_DB_PATH = ${SRC_GATHERING_PATH}/db
export SRC_GATHERING_DICTIONARY_PATH = ${SRC_GATHERING_PATH}/dictionary
export SRC_GATHERING_TAXONOMY_PATH = ${SRC_GATHERING_PATH}/taxonomy
export SRC_GATHERING_TRANSLATION_PATH = ${SRC_GATHERING_PATH}/translation
export SRC_GATHERING_VALIDATION_PATH = ${SRC_GATHERING_PATH}/validation

export SRC_CURATING_PATH = ${SRC_PATH}/2_curating
export SRC_CURATING_EDITING_PATH = ${SRC_CURATING_PATH}/2_editing
export SRC_CURATING_EDITING_STRUCTURE_PATH =  ${SRC_CURATING_EDITING_PATH}/structure
export SRC_CURATING_EDITING_STRUCTURE_TRANSLATING_PATH =  ${SRC_CURATING_EDITING_STRUCTURE_PATH}/1_translating
export SRC_CURATING_EDITING_STRUCTURE_PROCESSINGANDENRICHING_PATH =  ${SRC_CURATING_EDITING_STRUCTURE_PATH}/3_processingAndEnriching
export SRC_CURATING_EDITING_STRUCTURE_ENRICHING_PATH =  ${SRC_CURATING_EDITING_STRUCTURE_PATH}/4_enriching
export SRC_CURATING_EDITING_ORGANISM_PATH =  ${SRC_CURATING_EDITING_PATH}/organism
export SRC_CURATING_EDITING_ORGANISM_PATH_KT = ${SRC_CURATING_EDITING_ORGANISM_PATH}/2_translating_organism_kotlin
export SRC_CURATING_EDITING_REFERENCE_PATH =  ${SRC_CURATING_EDITING_PATH}/reference
export SRC_CURATING_EDITING_REFERENCE_TRANSLATING_PATH =  ${SRC_CURATING_EDITING_REFERENCE_PATH}/1_translating

export SRC_ANALYSING_PATH = ${SRC_PATH}/3_analyzing

export SRC_VISUALIZING_PATH = ${SRC_PATH}/4_visualizing

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