Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

swh:1:snp:0c004a03453a29b80f921a24433f7e780b9ceb53
  • Code
  • Branches (34)
  • Releases (0)
    • Branches
    • Releases
    • HEAD
    • refs/heads/RELEASE_3_10
    • refs/heads/RELEASE_3_11
    • refs/heads/RELEASE_3_12
    • refs/heads/RELEASE_3_7
    • refs/heads/RELEASE_3_8
    • refs/heads/RELEASE_3_9
    • refs/heads/appeveyor
    • refs/heads/archs4
    • refs/heads/assaron-patch-1
    • refs/heads/develop
    • refs/heads/export-dataset-history
    • refs/heads/master
    • refs/heads/r-3.4
    • refs/heads/slack-test
    • refs/heads/travis-fix
    • refs/tags/v1.1.2
    • refs/tags/v1.1.3
    • refs/tags/v1.1.5
    • refs/tags/v1.1.6
    • refs/tags/v1.11.0
    • refs/tags/v1.2.0
    • refs/tags/v1.2.1
    • refs/tags/v1.3.0
    • refs/tags/v1.3.1
    • refs/tags/v1.3.2
    • refs/tags/v1.3.3
    • refs/tags/v1.3.4
    • refs/tags/v1.3.5
    • refs/tags/v1.7.2
    • refs/tags/v1.7.3
    • refs/tags/v1.7.4
    • refs/tags/v1.8.0
    • refs/tags/v1.9.0
    • refs/tags/v1.9.2
    No releases to show
  • 7fd71c2
  • /
  • man
  • /
  • getGDS.Rd
Raw File Download
Permalinks

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
  • directory
  • revision
  • snapshot
content badge Iframe embedding
swh:1:cnt:1f7e65d756e3b625f1fc1a157d571c3c9e9b8665
directory badge Iframe embedding
swh:1:dir:0a9099855053b83601701ed83ad13664939d07bf
revision badge
swh:1:rev:d0c13affeb1def1f728f0e57c64e55fc9dc7cb25
snapshot badge
swh:1:snp:0c004a03453a29b80f921a24433f7e780b9ceb53
Citations

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
  • directory
  • revision
  • snapshot
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Tip revision: d0c13affeb1def1f728f0e57c64e55fc9dc7cb25 authored by Alexey Sergushichev on 21 December 2019, 15:46:32 UTC
update js to fix tests
Tip revision: d0c13af
getGDS.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getGDS}
\alias{getGDS}
\title{Load ExpressionSet from GEO Datasets}
\usage{
getGDS(name, destdir = tempdir(),
  mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}

\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}

\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
ExpressionSet object wrapped in list, that was available by given
    in \code{name} variable GEO identifier.
}
\description{
\code{getGDS} return the ExpressionSet object corresponding
    to GEO Dataset identifier.
}
\examples{
getGDS('GDS4922')

}

Software Heritage — Copyright (C) 2015–2025, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Contact— JavaScript license information— Web API

back to top