#PBS -l select=1:ncpus=1:mem=2gb
#PBS -l walltime=48:00:00

start=$SECONDS

module load anaconda3/personal

source activate

conda activate insertion_site_analysis

cd /rds/general/project/bacterial_evo_genomics/live/gps_annotations_4_2_2020/gps_gubbins_runs

echo $PWD

python ./ISA/python/running_act_comparisons.py --csv gps_reference_isolate_both_fasta.csv \
--perl_dir ./ISA/perl/ --act_dir ./act_compos/ 

duration=$(( SECONDS - start ))

echo $duration > act_comparison_time.txt