python
#if str($fastq_output) == "fastq_false" #python '$__tool_directory__/sff_extract.py' $clip --seq_file='$out_file3' --qual_file='$out_file4' --xml_file='$out_file2' '$input'
#elif str($fastq_output) == "fastq_true" #python '$__tool_directory__/sff_extract.py' $clip --fastq --seq_file='$out_file1' --xml_file='$out_file2' '$input'
#end if#
fastq_output is Truefastq_output is Falsefastq_output is False
**What it does**
This tool extracts data from the 454 Sequencer SFF format and creates three files containing the:
Sequences (FASTA),
Qualities (QUAL) and
Clippings (XML)