https://github.com/Danko-Lab/F1_8Organs
Tip revision: 8093a6c2ca1b15e869608c55bbef48dc539dad38 authored by shaopei on 10 May 2021, 03:46:04 UTC
updates
updates
Tip revision: 8093a6c
Tunit_predict_manuscript.sh
# use 5 state HMM
for t in BN HT SK SP KD LV GI ST
do
Rscript run.hmm.h5_F1bedgraph.R ${t}_all ${t}_all.dREG.peak.score.bed.gz ${t}_all_plus.bw ${t}_all_minus.bw &
done
# double checked in /workdir/sc2457/F1_Tissues/bigWig/tunit_h5_prediction_replicates