https://github.com/ctlab/phantasus
Tip revision: a372342eccfe3d36bceee43e38b2db79dce05c8a authored by vobencha on 30 October 2018, 15:42:08 UTC
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
Tip revision: a372342
README.md
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This project contains several tools for gene expression analysis with help of R/Bioconductor`
## Installation
The package requires installing `devtools` package and Bioconductor library set up.
```{r}
devtools::install_github("ctlab/phantasus")
```
A warning could appear that the repository contain submodules. This warning
can be safely ignored.
## Running
In R:
```{r}
library(phantasus)
servePhantasus('0.0.0.0', 8000, cacheDir='cache')
```
Open `http://localhost:8000` in your browser.
## System dependencies
There are several system packages that have to be installed on the system. The
names of these packages will be displayed during installation. On Ubuntu can
install them beforehand and all together using command:
```{bash}
sudo apt-get install libapparmor-dev libprotobuf-dev protobuf-compiler libcurl4-openssl-dev libssl-dev libxml2-dev
```
## Docker
To simplify deployment phantasus Docker image can be used. It is build regularly and is available at https://hub.docker.com/r/dzenkova/phantasus
and can be run with the following commands:
```{bash}
docker pull dzenkova/phantasus
docker run -t -d -p 80:80 dzenkova/phantasus
```