Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

swh:1:snp:a568cc5cff39965992895669038ed8c43a59eedd
  • Code
  • Branches (1)
  • Releases (0)
    • Branches
    • Releases
    • HEAD
    • refs/heads/main
    No releases to show
  • bbb89f8
  • /
  • Figure 2 -- Known Reward Thresholds
  • /
  • Figure_2_Generate.m
Raw File Download

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
  • directory
  • revision
  • snapshot
content badge Iframe embedding
swh:1:cnt:271e8635bbc2a2cec69e77ee50e25067bf123efa
directory badge Iframe embedding
swh:1:dir:c289392a1a31e5d3a4f39269e7a145198df6d2ce
revision badge
swh:1:rev:2878a3d9f5a3b9b89a0084a897bef3414e9de4a2
snapshot badge
swh:1:snp:a568cc5cff39965992895669038ed8c43a59eedd

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
  • directory
  • revision
  • snapshot
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Tip revision: 2878a3d9f5a3b9b89a0084a897bef3414e9de4a2 authored by nwbarendregt on 03 May 2022, 15:08:29 UTC
Add files via upload
Tip revision: 2878a3d
Figure_2_Generate.m
% Figure_2_Generate.m
% Script used to generate Figure 2 from Barendregt et al., 2022.

clear

% Define simulation variables for reward change task simulations:
T = 5; dt = 0.005;  t_i = 1;
dg = 0.001;
m = 2; c = @(t) 1; N = 5;
R = NaN(1,T/dt+1); 
R(1:100) = 4; R(101:end) = 5;

% Simulate reward timeseries (Fig. 2A) and normative model (Fig. 2B):
RC_Threshold_Schematic(T,dt,t_i,dg,m,c,R,N)

% Load motif data:
load('RC_Threshold_Motifs.mat')

% Generate colormap of motifs (Fig. 2C):
figure
imagesc([R_1(1) R_1(end)],[R_2(1) R_2(end)],type')
set(gca,'ydir','normal')
colormap([253 180 98;...
    190 186 218;...
    251 128 114;...
    128 177 211]/255)

% Define simulation parameters to construct empirical response time
% distributions:
N_trial = 1e4;
mid = linspace(0,1,25);
edges = [mid-0.5*(mid(1)+mid(2)) mid(end)+0.5*(mid(1)+mid(2))];

% Generate motif i behavior and response distribution (Fig. 2i):
figure
plot(0:dt:(T/5),squeeze(thresh(1,100,:)),'linewidth',15,'color','#bebada')
hold on
plot(0:dt:(T/5),squeeze(-thresh(1,100,:)),'linewidth',15,'color','#bebada')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
y = RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(1,100,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#bebada')
xlim([0 T/5])

% Generate motif ii behavior and response distribution (Fig. 2ii):
figure
plot(0:dt:(T/5),squeeze(thresh(40,60,:)),'linewidth',15,'color','#fb8072')
hold on
plot(0:dt:(T/5),squeeze(-thresh(40,60,:)),'linewidth',15,'color','#fb8072')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
y = RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(40,60,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#fb8072')
xlim([0 T/5])

% Generate motif iii behavior and response distribution (Fig. 2iii):
figure
plot(0:dt:(T/5),squeeze(thresh(50,50,:)),'linewidth',15,'color','#80b1d3')
hold on
plot(0:dt:(T/5),squeeze(-thresh(50,50,:)),'linewidth',15,'color','#80b1d3')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
y = RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(50,50,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#80b1d3')
xlim([0 T/5])

% Generate motif iv behavior and response distribution (Fig. 2iv):
figure
plot(0:dt:(T/5),squeeze(thresh(55,45,:)),'linewidth',15,'color','#fb8072')
hold on
plot(0:dt:(T/5),squeeze(-thresh(55,45,:)),'linewidth',15,'color','#fb8072')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
y = RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(55,45,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#fb8072')
xlim([0 T/5])

% Generate motif v behavior and response distribution (Fig. 2v):
figure
plot(0:dt:(T/5),squeeze(thresh(100,1,:)),'linewidth',15,'color','#fdb462')
hold on
plot(0:dt:(T/5),squeeze(-thresh(100,1,:)),'linewidth',15,'color','#fdb462')
line([0 T/5],[0 0],'linestyle','--','color','k','linewidth',5)
xlim([0 T/5])
NB_RT = NaN(1,N_trial);
y = RDMD_trial_generate(m,T/5,dt,0,N_trial);
for n = 1:N_trial
    NB_RT(n) = RDMD_sim_norm(y(n,:),T/5,dt,squeeze(thresh(100,1,:)),0);
end
NB_RT = histcounts(NB_RT,edges,'normalization','pdf');
figure
stairs(edges,[NB_RT 0],'linewidth',15,'color','#fdb462')
xlim([0 T/5])

back to top

Software Heritage — Copyright (C) 2015–2025, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API