https://github.com/wagenadl/sbemalign
Tip revision: d76dcc55e7dad3e7bca91de24d20d201696a5339 authored by Daniel A. Wagenaar on 07 March 2020, 05:53:12 UTC
Cleaned up repo for paper submission
Cleaned up repo for paper submission
Tip revision: d76dcc5
config.py
#!/usr/bin/python
# Directory for all output and most intermediate files
root = '/lsi2/dw/170428'
# Directory for intermediate files for movie creation
tmproot = '/home/wagenaar/tmp'
# Information about postgres database
database = 'align170428'
dbhost = 'localhost'
dbuser = 'wagenaar'
def rawtile(r, m, s):
'''RAWTILE - Filename for raw image
fn = RAWTILE(r, m, s) returns the path of the raw image for given
run/montage/slice.'''
root = '/lsi1/push/170428-SBEM'
if r==40 and s<143:
return f'{root}/Run{r}/Montage_{m:03}/Prefix_OnPoint_{s:04}.tif'
elif r==11:
return f'{root}/Run{r}/Montage_{m:03}/Run{r}_OnPoint_OnPoint_{s:04}.tif'
else:
return f'{root}/Run{r}/Montage_{m:03}/Run{r}_OnPoint_{s:04}.tif'
def ncolumns(r):
if r>=51 or r<=2:
return 1
else:
return 2