Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

  • 9129b66
  • /
  • notebooks
  • /
  • demo_2d.py
Raw File Download

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
  • directory
content badge
swh:1:cnt:2a3525c2af422c19a8320eff1b50afa57aed2135
directory badge
swh:1:dir:3ea03368389b10e9be9528aef049c41602648719

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
  • directory
(requires biblatex-software package)
Generating citation ...
(requires biblatex-software package)
Generating citation ...
demo_2d.py

from __future__ import print_function, division
import os
import sys, petsc4py
petsc4py.init(sys.argv)
import mpi4py.MPI as mpi
from petsc4py import PETSc
import numpy as np
from GenEO import *

def rhs(coords, rhs):
    n = rhs.shape
    rhs[..., 1] = -9.81

OptDB = PETSc.Options()
Lx = OptDB.getInt('Lx', 10)
Ly = OptDB.getInt('Ly', 1)
n  = OptDB.getInt('n', 16)
nx = OptDB.getInt('nx', Lx*n)
ny = OptDB.getInt('ny', Ly*n)
E1 = OptDB.getReal('E1', 10**6)
E2 = OptDB.getReal('E2', 1)
nu1 = OptDB.getReal('nu1', 0.4)
nu2 = OptDB.getReal('nu2', 0.4)

hx = Lx/(nx - 1)
hy = Ly/(ny - 1)

da = PETSc.DMDA().create([nx, ny], dof=2, stencil_width=1)
da.setUniformCoordinates(xmax=Lx, ymax=Ly)
da.setMatType(PETSc.Mat.Type.IS)
da.setFieldName(0, 'u')
da.setFieldName(1, 'v')

path = './output_2d/'
if mpi.COMM_WORLD.rank == 0:
    if not os.path.exists(path):
        os.mkdir(path)
    else:
        os.system('rm {}/*.vts'.format(path))

def lame_coeff(x, y, v1, v2):
    output = np.empty(x.shape)
    mask = np.logical_or(np.logical_and(.2<=y, y<=.4),np.logical_and(.6<=y, y<=.8))
    output[mask] = v1
    output[np.logical_not(mask)] = v2
    return output

# non constant Young's modulus and Poisson's ratio 
E = buildCellArrayWithFunction(da, lame_coeff, (E1,E2))
nu = buildCellArrayWithFunction(da, lame_coeff, (nu1,nu2))

lamb = (nu*E)/((1+nu)*(1-2*nu)) 
mu = .5*E/(1+nu)

class callback:
    def __init__(self, da):
        self.da = da
        ranges = da.getRanges()
        ghost_ranges = da.getGhostRanges()
        
        self.slices = []
        for r, gr in zip(ranges, ghost_ranges):
            self.slices.append(slice(gr[0], r[1]))
        self.slices = tuple(self.slices)

        self.it = 0

    def __call__(self, locals):
        pyKSP = locals['self']
        proj = pyKSP.mpc.proj

        viewer_x = PETSc.Viewer().createVTK(path + 'cg_ite_{}.vts'.format(self.it), 'w', comm = PETSc.COMM_WORLD)
        locals['x'].view(viewer_x)
        viewer_x.destroy()
        
        if self.it == 0:
            work, _ = proj.A.getVecs()
            for i, vec in enumerate(proj.coarse_vecs):
                if vec:
                    proj.workl = vec.copy()
                else:
                    proj.workl.set(0.)
                work.set(0)
                proj.scatter_l2g(proj.workl, work, PETSc.InsertMode.ADD_VALUES)

                viewer = PETSc.Viewer().createVTK(path + 'coarse_vec_{}.vts'.format(i), 'w', comm = PETSc.COMM_WORLD)
                tmp = self.da.createGlobalVec()
                tmpl_a = self.da.getVecArray(tmp)
                work_a = self.da.getVecArray(work)
                tmpl_a[:] = work_a[:]
                tmp.view(viewer)
                viewer.destroy()
        self.it += 1


x = da.createGlobalVec()
b = buildRHS(da, [hx, hy], rhs)
A = buildElasticityMatrix(da, [hx, hy], lamb, mu)
A.assemble()
bcApplyWest(da, A, b)

#Setup the preconditioner (or multipreconditioner) and the coarse space
pcbnn = PCBNN(A)

# Set initial guess
x.setRandom()
xnorm = b.dot(x)/x.dot(A*x)
x *= xnorm

ksp = PETSc.KSP().create()
ksp.setOperators(A)
ksp.setType(ksp.Type.PYTHON)
pyKSP = KSP_AMPCG(pcbnn)
pyKSP.callback = callback(da)
ksp.setPythonContext(pyKSP)
ksp.setFromOptions()
ksp.setInitialGuessNonzero(True)

ksp.solve(b, x)

def write_simu_info(da, viewer):
    lamb_petsc = da.createGlobalVec()
    lamb_a = da.getVecArray(lamb_petsc)
    coords = da.getCoordinates()
    coords_a = da.getVecArray(coords)
    E = lame_coeff(coords_a[:, :, 0], coords_a[:, :, 1], E1, E2)
    nu = lame_coeff(coords_a[:, :, 0], coords_a[:, :, 1], nu1, nu2)

    lamb_a[:, :, 0] = (nu*E)/((1+nu)*(1-2*nu)) 
    lamb_a[:, :, 1] = mpi.COMM_WORLD.rank
    lamb_petsc.view(viewer)


viewer = PETSc.Viewer().createVTK(path + 'solution_2d.vts', 'w', comm = PETSc.COMM_WORLD)
x.view(viewer)
write_simu_info(da, viewer)
viewer.destroy()

back to top

Software Heritage — Copyright (C) 2015–2026, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API