10 15 2 2
1.00 1.00
s m
0
1 0 10000
1 0 20000
1 0 15000
1 0 3000000
1 0 0.005
1 0 0.005
2 0.001 0.0 0.0007 0.0
1 -4.1 0.0 0.5 0.0
0
0
----------------------------------------------------------------------------------------
PopABC - Mark Beaumont & Joao Lopes 01/05/09
>nr_iterations, generation_time, nr_populations, nr_loci
>escalar per locus (autosome - 1; X-linked - 0.75; Y-linked or mitDNA - 0.25)
>type of DNA data (s - sequence; m - microssatelites)
>topology: 0 - uniform distribution;
3 - uniform distribution (and choose a Model marker);
>ne1 params: 1 - uniform distribtuion;
2 - generalized gamma distribution;
>ne2 params
>neanc1 params
>t1 params: 1 - uniform distribtuion;
2 - generalized gamma distribution;
>mig1 params: 0 - no migration;
1 - uniform distribtuion;
2 - generalized gamma distribution;
3 - uniform distribtuion (on number of migrations);
4 - generalized gamma distribution (on number of migrations).
[for 3 and 4 real mig rate is calculated as nmig/Ne]
>mig2 params
>mutM params: 0 - zero mutation;
1 - lognormal distribution: (mean of mean(log10); stdev of mean(log10);
mean of Sdev(log10); stdev of stdev(log10). Stdev truncated at 0.
2 - normal distribution: (mean of mean; stdev of mean; mean of Sdev;
stdev of stdev. Stdev truncated at 0.
>mutS params
>recM params: 0 - zero recombination;
1 - lognormal distribution: (mean of mean(log10); stdev of mean(log10);
mean of Sdev(log10); stdev of stdev(log10). Stdev truncated at 0.
2 - normal distribution: (mean of mean; stdev of mean; mean of Sdev;
stdev of stdev. Stdev truncated at 0.
>recS params
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Tree topology:
|| Neanc1
|| |
|| |
t1|| ---------
|| | |
|| | |
\/ Ne1 Ne2
