Package: sbioPN
Version: 1.1.0
Date: 2014-03-15
Title: sbioPN: Simulation of deterministic and stochastic spatial
        biochemical reaction networks using Petri Nets
Author: Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso <rbertolusso@rice.edu>
Description: 
  sbioPN is a package suited to perform simulation of deterministic and stochastic systems of biochemical reaction
  networks with spatial effects.
  Models are defined using a subset of Petri Nets, in a way that is close at how chemical reactions are defined.
  For deterministic solutions, sbioPN creates the associated system of differential equations "on the fly", and
  solves it with a Runge Kutta Dormand Prince 45 explicit algorithm.
  For stochastic solutions, sbioPN offers two variants of Gillespie algorithm, or SSA.
  For hybrid deterministic/stochastic,
  it employs the Haseltine and Rawlings algorithm, that partitions the system in fast and slow reactions.
  sbioPN algorithms are developed in C to achieve adequate performance.
NeedsCompilation: yes
License: GPL (>= 2)
Packaged: 2014-03-15 16:57:56 UTC; mame
Repository: CRAN
Date/Publication: 2014-03-15 18:37:54