https://github.com/cran/onemap
Tip revision: 7b097967863ea7007ae55727f8113c1fa1523d50 authored by Cristiane Taniguti on 10 December 2021, 12:00:02 UTC
version 2.8.1
version 2.8.1
Tip revision: 7b09796
DESCRIPTION
Package: onemap
Title: Construction of Genetic Maps in Experimental Crosses
Version: 2.8.1
Description: Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.
Date: 2021-12-09
Authors@R: c(person("Gabriel",
"Margarido",
role = "aut",
email = "gramarga@usp.br"),
person("Marcelo",
"Mollinari",
role = "aut"),
person("Cristiane",
"Taniguti",
role=c("ctb", "cre"),
email="chtaniguti@tamu.edu"),
person("Getulio",
"Ferreira",
role="ctb"),
person("Rodrigo",
"Amadeu",
role = "ctb"),
person("Karl",
"Broman",
role = "ctb"),
person(given = "Katharine",
family = "Preedy",
role = c("ctb", "cph"),
comment = "MDS ordering algorithm"),
person(given = "Bastian",
family = "Schiffthaler",
role = c("ctb","cph"),
comment = "HMM parallelization"),
person("Augusto",
"Garcia",
role = c("aut", "ctb"),
email = "augusto.garcia@usp.br"))
Author: Gabriel Margarido [aut],
Marcelo Mollinari [aut],
Cristiane Taniguti [ctb, cre],
Getulio Ferreira [ctb],
Rodrigo Amadeu [ctb],
Karl Broman [ctb],
Katharine Preedy [ctb, cph] (MDS ordering algorithm),
Bastian Schiffthaler [ctb, cph] (HMM parallelization),
Augusto Garcia [aut, ctb]
LinkingTo: Rcpp (>= 0.10.5)
Depends: R (>= 3.6.0)
Imports: ggplot2 (>= 2.2.1), plotly (>= 4.7.1), reshape2 (>= 1.4.1),
Rcpp (>= 0.10.5), graphics, methods, stats, utils, grDevices,
smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr,
RColorBrewer, dendextend, rebus, vcfR (>= 1.6.0), stringi
Suggests: knitr (>= 1.10), rmarkdown, testthat, stringr
VignetteBuilder: knitr
Encoding: UTF-8
License: GPL-3
URL: https://github.com/augusto-garcia/onemap
BugReports: https://github.com/augusto-garcia/onemap/wiki
Maintainer: Cristiane Taniguti <chtaniguti@tamu.edu>
Repository: CRAN
Packaged: 2021-12-09 18:43:16 UTC; chtan
NeedsCompilation: yes
Date/Publication: 2021-12-10 13:00:02 UTC
RoxygenNote: 7.1.2
biocViews: