syMatrix.c
#include "syMatrix.h"
SEXP syMatrix_validate(SEXP obj)
{
SEXP uplo = GET_SLOT(obj, Matrix_uploSym);
int *Dim = INTEGER(GET_SLOT(obj, Matrix_DimSym));
char *val;
if (length(uplo) != 1)
return ScalarString(mkChar("uplo slot must have length 1"));
val = CHAR(STRING_ELT(uplo, 0));
if (strlen(val) != 1)
return ScalarString(mkChar("uplo[1] must have string length 1"));
if (toupper(*val) != 'U' && toupper(*val) != 'L')
return ScalarString(mkChar("uplo[1] must be \"U\" or \"L\""));
if (Dim[0] != Dim[1])
return ScalarString(mkChar("Symmetric matrix must be square"));
return ScalarLogical(1);
}
double get_norm_sy(SEXP obj, char *typstr)
{
char typnm[] = {'\0', '\0'};
int *dims = INTEGER(GET_SLOT(obj, Matrix_DimSym));
double *work = (double *) NULL;
typnm[0] = norm_type(typstr);
if (*typnm == 'I' || *typnm == 'O') {
work = (double *) R_alloc(dims[0], sizeof(double));
}
return F77_CALL(dlansy)(typnm,
CHAR(asChar(GET_SLOT(obj, Matrix_uploSym))),
dims, REAL(GET_SLOT(obj, Matrix_xSym)),
dims, work);
}
SEXP syMatrix_norm(SEXP obj, SEXP type)
{
return ScalarReal(get_norm_sy(obj, CHAR(asChar(type))));
}
static
double set_rcond_sy(SEXP obj, char *typstr)
{
char typnm[] = {'\0', '\0'};
SEXP rcv = GET_SLOT(obj, Matrix_rcondSym);
double rcond;
typnm[0] = rcond_type(typstr);
rcond = get_double_by_name(rcv, typnm);
/* FIXME: Need a factorization here. */
if (R_IsNA(rcond)) {
int *dims = INTEGER(GET_SLOT(obj, Matrix_DimSym)), info;
double anorm = get_norm_sy(obj, "O");
error("Code for set_rcond_sy not yet written");
F77_CALL(dsycon)(CHAR(asChar(GET_SLOT(obj, Matrix_uploSym))),
dims, REAL(GET_SLOT(obj, Matrix_xSym)),
dims, INTEGER(GET_SLOT(obj, install("pivot"))),
&anorm, &rcond,
(double *) R_alloc(2*dims[0], sizeof(double)),
(int *) R_alloc(dims[0], sizeof(int)), &info);
SET_SLOT(obj, Matrix_rcondSym,
set_double_by_name(rcv, rcond, typnm));
}
return rcond;
}
SEXP syMatrix_rcond(SEXP obj, SEXP type)
{
/* FIXME: This is a stub */
/* return ScalarReal(set_rcond_sy(obj, CHAR(asChar(type)))); */
return ScalarReal(NA_REAL);
}
static
void make_symmetric(double *to, SEXP from, int n)
{
int i, j;
if (toupper(*CHAR(asChar(GET_SLOT(from, Matrix_uploSym)))) == 'U') {
for (j = 0; j < n; j++) {
for (i = j+1; i < n; i++) {
to[i + j*n] = to[j + i*n];
}
}
} else {
for (j = 1; j < n; j++) {
for (i = 0; i < j && i < n; i++) {
to[i + j*n] = to[j + i*n];
}
}
}
}
SEXP syMatrix_solve(SEXP a)
{
/* FIXME: Write the code */
error("code for syMatrix_solve not yet written");
return R_NilValue;
}
SEXP syMatrix_matrix_solve(SEXP a, SEXP b)
{
/* FIXME: Write the code */
error("code for syMatrix_matrix_solve not yet written");
return R_NilValue;
}
SEXP syMatrix_as_geMatrix(SEXP from)
{
SEXP val = PROTECT(NEW_OBJECT(MAKE_CLASS("geMatrix"))),
rcondSym = Matrix_rcondSym;
SET_SLOT(val, Matrix_rcondSym, allocVector(REALSXP, 0));
SET_SLOT(val, Matrix_factorization, allocVector(VECSXP, 0));
SET_SLOT(val, rcondSym, duplicate(GET_SLOT(from, rcondSym)));
SET_SLOT(val, Matrix_xSym, duplicate(GET_SLOT(from, Matrix_xSym)));
SET_SLOT(val, Matrix_DimSym,
duplicate(GET_SLOT(from, Matrix_DimSym)));
make_symmetric(REAL(GET_SLOT(val, Matrix_xSym)), from,
INTEGER(GET_SLOT(val, Matrix_DimSym))[0]);
UNPROTECT(1);
return val;
}
SEXP syMatrix_as_matrix(SEXP from)
{
int n = INTEGER(GET_SLOT(from, Matrix_DimSym))[0];
SEXP val = PROTECT(allocMatrix(REALSXP, n, n));
make_symmetric(Memcpy(REAL(val),
REAL(GET_SLOT(from, Matrix_xSym)), n * n),
from, n);
UNPROTECT(1);
return val;
}
SEXP syMatrix_geMatrix_mm(SEXP a, SEXP b)
{
int *adims = INTEGER(GET_SLOT(a, Matrix_DimSym)),
*bdims = INTEGER(GET_SLOT(b, Matrix_DimSym)),
*cdims,
m = adims[0], n = bdims[1], k = adims[1];
SEXP val = PROTECT(NEW_OBJECT(MAKE_CLASS("geMatrix")));
double one = 1., zero = 0.;
if (bdims[0] != k)
error("Matrices are not conformable for multiplication");
if (m < 1 || n < 1 || k < 1)
error("Matrices with zero extents cannot be multiplied");
SET_SLOT(val, Matrix_factorization, allocVector(VECSXP, 0));
SET_SLOT(val, Matrix_rcondSym, allocVector(REALSXP, 0));
SET_SLOT(val, Matrix_xSym, allocVector(REALSXP, m * n));
SET_SLOT(val, Matrix_DimSym, allocVector(INTSXP, 2));
cdims = INTEGER(GET_SLOT(val, Matrix_DimSym));
cdims[0] = m; cdims[1] = n;
F77_CALL(dsymm)("L", CHAR(asChar(GET_SLOT(a, Matrix_uploSym))),
adims, bdims+1, &one,
REAL(GET_SLOT(a, Matrix_xSym)), adims,
REAL(GET_SLOT(b, Matrix_xSym)), bdims,
&zero, REAL(GET_SLOT(val, Matrix_xSym)), adims);
UNPROTECT(1);
return val;
}
SEXP syMatrix_geMatrix_mm_R(SEXP a, SEXP b)
{
int *adims = INTEGER(GET_SLOT(a, Matrix_DimSym)),
*bdims = INTEGER(GET_SLOT(b, Matrix_DimSym)),
*cdims,
m = adims[0], n = bdims[1], k = adims[1];
SEXP val = PROTECT(NEW_OBJECT(MAKE_CLASS("geMatrix")));
double one = 1., zero = 0.;
if (bdims[0] != k)
error("Matrices are not conformable for multiplication");
if (m < 1 || n < 1 || k < 1)
error("Matrices with zero extents cannot be multiplied");
SET_SLOT(val, Matrix_rcondSym, allocVector(REALSXP, 0));
SET_SLOT(val, Matrix_factorization, allocVector(VECSXP, 0));
SET_SLOT(val, Matrix_xSym, allocVector(REALSXP, m * n));
SET_SLOT(val, Matrix_DimSym, allocVector(INTSXP, 2));
cdims = INTEGER(GET_SLOT(val, Matrix_DimSym));
cdims[0] = m; cdims[1] = n;
F77_CALL(dsymm)("R", CHAR(asChar(GET_SLOT(a, Matrix_uploSym))),
adims, bdims+1, &one,
REAL(GET_SLOT(a, Matrix_xSym)), adims,
REAL(GET_SLOT(b, Matrix_xSym)), bdims,
&zero, REAL(GET_SLOT(val, Matrix_xSym)), adims);
UNPROTECT(1);
return val;
}