dgTMatrix.c
#include "dgTMatrix.h"
#include "chm_common.h"
#include "Tsparse.h"
SEXP dgTMatrix_validate(SEXP x)
{
SEXP
islot = GET_SLOT(x, Matrix_iSym),
xslot = GET_SLOT(x, Matrix_xSym);
if (LENGTH(xslot) != LENGTH(islot))
return mkString(_("lengths of slots i and x must match"));
return ScalarLogical(1);
}
static void
insert_triplets_in_array(int m, int n, int nnz,
const int xi[], const int xj[], const double xx[],
double vx[])
{
int i;
memset(vx, 0, sizeof(double) * m * n);
for (i = 0; i < nnz; i++) {
vx[xi[i] + xj[i] * m] += xx[i]; /* allow redundant entries in x */
}
}
SEXP dgTMatrix_to_dgeMatrix(SEXP x)
{
SEXP dd = GET_SLOT(x, Matrix_DimSym),
islot = GET_SLOT(x, Matrix_iSym),
ans = PROTECT(NEW_OBJECT(MAKE_CLASS("dgeMatrix")));
int *dims = INTEGER(dd),
m = dims[0],
n = dims[1];
SET_SLOT(ans, Matrix_factorSym, allocVector(VECSXP, 0));
SET_SLOT(ans, Matrix_DimSym, duplicate(dd));
SET_SLOT(ans, Matrix_xSym, allocVector(REALSXP, m * n));
insert_triplets_in_array(m, n, length(islot),
INTEGER(islot), INTEGER(GET_SLOT(x, Matrix_jSym)),
REAL(GET_SLOT(x, Matrix_xSym)),
REAL(GET_SLOT(ans, Matrix_xSym)));
UNPROTECT(1);
return ans;
}
SEXP dgTMatrix_to_matrix(SEXP x)
{
SEXP dd = GET_SLOT(x, Matrix_DimSym),
islot = GET_SLOT(x, Matrix_iSym);
int m = INTEGER(dd)[0],
n = INTEGER(dd)[1];
SEXP ans = PROTECT(allocMatrix(REALSXP, m, n));
insert_triplets_in_array(m, n, length(islot),
INTEGER(islot), INTEGER(GET_SLOT(x, Matrix_jSym)),
REAL(GET_SLOT(x, Matrix_xSym)),
REAL(ans));
UNPROTECT(1);
return ans;
}
#ifdef _valid_only_for_old_graph_package
SEXP graphNEL_as_dgTMatrix(SEXP x, SEXP symmetric)
{
int sym = asLogical(symmetric);
SEXP nodes = GET_SLOT(x, install("nodes")),
edgeL = GET_SLOT(x, install("edgeL")),
ans = PROTECT(NEW_OBJECT(MAKE_CLASS(sym
? "dsTMatrix"
: "dgTMatrix")));
int *ii, *jj, *dims, i, j, nnd = LENGTH(nodes), pos, totl;
double *xx;
totl = 0;
for (i = 0; i < nnd; i++)
totl += LENGTH(Matrix_getElement(VECTOR_ELT(edgeL, i), "edges"));
dims = INTEGER(ALLOC_SLOT(ans, Matrix_DimSym, INTSXP, 2));
dims[0] = dims[1] = nnd;
if (isString(nodes)) {
SEXP dnms = ALLOC_SLOT(ans, Matrix_DimNamesSym, VECSXP, 2);
SET_VECTOR_ELT(dnms, 0, duplicate(nodes));
SET_VECTOR_ELT(dnms, 1, duplicate(nodes));
}
ii = Calloc(totl, int);
jj = Calloc(totl, int);
xx = Calloc(totl, double);
pos = 0;
for (i = 0; i < nnd; i++) {
SEXP edg = VECTOR_ELT(edgeL, i);
SEXP edges = Matrix_getElement(edg, "edges"),
weights = Matrix_getElement(edg, "weights");
int *edgs = INTEGER(PROTECT(coerceVector(edges, INTSXP))),
nedg = LENGTH(edges);
double *wts = REAL(weights);
for (j = 0; j < nedg; j++) {
int j1 = edgs[j] - 1;
/* symmetric case stores upper triangle only */
if ((!sym) || i <= j1) {
ii[pos] = i;
jj[pos] = j1;
xx[pos] = wts[j];
pos++;
}
}
UNPROTECT(1);
}
Memcpy(INTEGER(ALLOC_SLOT(ans, Matrix_iSym, INTSXP, pos)), ii, pos);
Memcpy(INTEGER(ALLOC_SLOT(ans, Matrix_jSym, INTSXP, pos)), jj, pos);
Memcpy(REAL(ALLOC_SLOT(ans, Matrix_xSym, REALSXP, pos)), xx, pos);
Free(ii); Free(jj); Free(xx);
UNPROTECT(1);
return ans;
}
#endif