get_reference.sh
#!/bin/bash
build_reference()
{
python ./hg19_insert.py
bowtie2-build ../metadata/reference/hg19_insert.fa ../metadata/reference/hg19_insert
cut -f1,2 hg19_insert.fa.fai > hg19_insert.chromsize
}
build_reference > "../result/build-reference.log" 2>&1 &