https://github.com/ekg/freebayes
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Tip revision: 60850dc518fc453622cbb40ad6dd9f67644ed859 authored by Pjotr Prins on 16 December 2020, 10:18:06 UTC
Disable cmake, but leave the file with a message
Tip revision: 60850dc
RELEASE-NOTES.md
## ChangeLog v1.3.4 (2020????)

+ Added support for --trim-complex-tail with #139 and 97735089a1bbf658862fb16f4514c0ad93195e0a (thanks @tsibley)

## ChangeLog v1.3.3 (20201213)

This is a maintenance release of Freebayes:

+ Freebayes compiles for ARM64
+ Freebayes supports CRAM and we added a test for CRAM and a hint in
  the README
+ Added Meson+Ninja build system for faster builds
+ Merged: Set CRAM reference for the reader #632 (thanks @SebastianHollizeck)
+ Merged: Fix help messages for python tools #635 (thanks @ibebio)
+ Fixed: Please port to Python3 #569 which removes Debian patch (thanks @tillea)
+ Moved unused files from ./src to ./contrib/freebayes
+ Moved stripped SeqLib source into ./contrib/SeqLib as SeqLib is no
  longer maintained
+ Made htslib a primary dependency of freebayes
+ Updated htslib to the latest version
+ Fixed clang build, requires a patch on htslib sent upstream with https://github.com/samtools/htslib/pull/1190
+ Applied https://github.com/walaj/SeqLib/pull/53 (thanks @jmarshall)
+ Freebayes builds against stock htslib for Debian etc. Unfortunately
  Debian does not include htslib headers, nor does it handle LZMA
  codecs for CRAM, so the source tree is pulled in for local
  builds. See #664.
+ Updated travis-CI: passes new meson builds for gcc
+ Added github-CI: passes

Some minor stuff:

+ Added regression test so we track some changes through git repo
+ Added github agent to deal with stale issues on the issue tracker

## Earlier release notes

See github [releases](https://github.com/freebayes/freebayes/releases)
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