Solver.py
#!/usr/bin/env python
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
#<LicenseText>
#
# CitcomS.py by Eh Tan, Eun-seo Choi, and Pururav Thoutireddy.
# Copyright (C) 2002-2005, California Institute of Technology.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
#</LicenseText>
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
from CitcomSLib import CPU_time, output, output_time, output_checkpoint, return_dt, return_t, return_step
from pyre.components.Component import Component
import journal
class Solver(Component):
def __init__(self, name, facility="solver"):
Component.__init__(self, name, facility)
self.all_variables = None
self.communicator = None
self.start_cpu_time = 0
return
def _dt(self):
'''get the value of dt from the C code'''
return return_dt(self.all_variables)
def _t(self):
'''get the value of t from the C code'''
return return_t(self.all_variables)
def _step(self):
'''get the value of step from the C code'''
return return_step(self.all_variables)
# Set these attributes as read-only properties, so that they are
# always in accordance with their counterparts in the C code
t = property(_t)
dt = property(_dt)
step = property(_step)
def initialize(self, application):
from CitcomSLib import citcom_init, global_default_values, set_signal
# initialize the "struct All_variables E" in C
comm = application.solverCommunicator
all_variables = citcom_init(comm.handle())
self.communicator = comm
self.all_variables = all_variables
# defined in child classes
self.initializeSolver()
# information about clock time
self.start_cpu_time = CPU_time()
# global interuption handling routine defined once here
set_signal()
# default values for various parameters
global_default_values(self.all_variables)
# read input parameters from file(s) and command line
inv = self.inventory
inv.mesher.initialize(all_variables)
inv.tsolver.initialize(all_variables)
inv.vsolver.initialize(all_variables)
inv.bc.initialize(all_variables)
inv.const.initialize(all_variables)
inv.ic.initialize(all_variables)
inv.output.initialize(all_variables)
inv.param.initialize(all_variables)
inv.phase.initialize(all_variables)
inv.tracer.initialize(all_variables)
inv.visc.initialize(all_variables)
from CitcomSLib import return_rank, return_pid
rank = return_rank(self.all_variables)
if rank == 0:
pid = return_pid(self.all_variables)
stream = open("pid%d.cfg" % pid, "w")
else:
stream = None
# XXX: This is a heck
# Write controller inventory to pid file
if stream:
print >> stream, "[CitcomS.controller]"
print >> stream, ("monitoringFrequency=%d" %
application.controller.inventory.monitoringFrequency)
print >> stream, ("checkpointFrequency=%d" %
application.controller.inventory.checkpointFrequency)
print >> stream
# passing the parameters to C
self.setProperties(stream)
self.initial_setup()
return
def launch(self, application):
if self.inventory.ic.inventory.post_p:
from CitcomSLib import readCheckpoint, postProcessing
readCheckpoint(self.all_variables)
# the program will finish after post_processing
postProcessing(self.all_variables)
self.save(1)
self.endSimulation()
return
if self.inventory.ic.inventory.restart:
from CitcomSLib import readCheckpoint
readCheckpoint(self.all_variables)
else:
# initial conditions
ic = self.inventory.ic
ic.launch()
self.solveVelocities()
# stop the computation if only computes stokes' problem
if self.inventory.stokes_flow_only:
self.advectTracers()
self.save(1)
self.endSimulation()
return
def initial_setup(self):
mesher = self.inventory.mesher
vsolver = self.inventory.vsolver
tsolver = self.inventory.tsolver
# create mesh
mesher.run()
# initialize const. related to mesh
vsolver.launch()
tsolver.launch()
return
def solveVelocities(self):
vsolver = self.inventory.vsolver
vsolver.run()
return
def advectTemperature(self, dt):
tsolver = self.inventory.tsolver
tsolver.run(dt)
return
def advectTracers(self):
self.inventory.tracer.run()
return
def newStep(self):
return
def stableTimestep(self):
tsolver = self.inventory.tsolver
dt = tsolver.stable_timestep()
return dt
def advance(self, dt):
self.advectTemperature(dt)
self.advectTracers()
self.solveVelocities()
return
def endTimestep(self, done):
self.inventory.visc.updateMaterial()
self.inventory.bc.updatePlateVelocity()
self.inventory.bc.updatePlateTemperature()
return done
def endSimulation(self):
self._avgCPUTime()
from CitcomSLib import citcom_finalize
citcom_finalize(self.all_variables, 0)
return
def _avgCPUTime(self):
step = self.step
total_cpu_time = CPU_time() - self.start_cpu_time
rank = self.communicator.rank
if not rank:
import sys
sys.stderr.write("Average cpu time taken for velocity step = %f\n"
% (total_cpu_time / (step+1)) )
return
def save(self, monitoringFrequency):
step = self.step
# output spacing is 'monitoringFrequency'
if not (step % monitoringFrequency):
output(self.all_variables, step)
output_time(self.all_variables, step)
return
def checkpoint(self, checkpointFrequency):
step = self.step
if not (step % checkpointFrequency):
output_checkpoint(self.all_variables)
return
def setProperties(self, stream):
from CitcomSLib import Solver_set_properties, check_settings_consistency
Solver_set_properties(self.all_variables, self.inventory, stream)
inv = self.inventory
inv.vsolver.setProperties(stream)
inv.mesher.setProperties(stream)
inv.tsolver.setProperties(stream)
inv.bc.setProperties(stream)
inv.const.setProperties(stream)
inv.ic.setProperties(stream)
inv.output.setProperties(stream)
inv.param.setProperties(stream)
inv.phase.setProperties(stream)
inv.tracer.setProperties(stream)
inv.visc.setProperties(stream)
check_settings_consistency(self.all_variables);
return
class Inventory(Component.Inventory):
import pyre.inventory as inv
# component modules
import CitcomS.Components.Advection_diffusion as Advection_diffusion
import CitcomS.Components.Stokes_solver as Stokes_solver
# components
from CitcomS.Components.BC import BC
from CitcomS.Components.Const import Const
from CitcomS.Components.IC import IC
from CitcomS.Components.Output import Output
from CitcomS.Components.Param import Param
from CitcomS.Components.Phase import Phase
from CitcomS.Components.Tracer import Tracer
from CitcomS.Components.Visc import Visc
tsolver = inv.facility("tsolver",
factory=Advection_diffusion.temperature_diffadv)
vsolver = inv.facility("vsolver",
factory=Stokes_solver.incompressibleNewtonian)
bc = inv.facility("bc", factory=BC)
const = inv.facility("const", factory=Const)
ic = inv.facility("ic", factory=IC)
output = inv.facility("output", factory=Output)
param = inv.facility("param", factory=Param)
phase = inv.facility("phase", factory=Phase)
tracer = inv.facility("tracer", factory=Tracer)
visc = inv.facility("visc", factory=Visc)
datadir = inv.str("datadir", default=".")
datadir_old = inv.str("datadir_old", default=".")
rayleigh = inv.float("rayleigh", default=1e+05)
dissipation_number = inv.float("dissipation_number", default=0.0)
gruneisen = inv.float("gruneisen", default=0.0)
surfaceT = inv.float("surfaceT", default=0.1)
#adiabaticT0 = inv.float("adiabaticT0", default=0.4)
Q0 = inv.float("Q0", default=0.0)
stokes_flow_only = inv.bool("stokes_flow_only", default=False)
verbose = inv.bool("verbose", default=False)
see_convergence = inv.bool("see_convergence", default=True)
# version
__id__ = "$Id$"
# End of file