index.rst
.. ipyrad documentation master file, created by
sphinx-quickstart on Sun Sep 6 00:44:22 2015.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
.. include:: global.rst
ipyrad: interactive assembly and analysis of RADseq data sets
=============================================================
Welcome to ipyrad, an interactive toolkit for assembly and analysis of
restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for
population genetic and phylogenetic studies.
In this documentation you can learn more about what ipyrad does
(:ref:`Features <features>`), and the broader goals behind its design
(:ref:`Ethos <ethos>`). We provide a detailed :ref:`User Guide<userguide>`
to explain how ipyrad works, as well as numerous example
:ref:`Tutorials <tutorials>` to make it easy to get started quickly.
Got questions about ipyrad? Join the conversation :ref:`here <gitter>`.
Documentation
=============
.. toctree::
:maxdepth: 2
ethos.rst
features.rst
installation.rst
quickguide.rst
notebooks.rst
userguide.rst
tutorials.rst
citing.rst
releasenotes.rst
support.rst
license.rst
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`