# Logs
logs
*.log*

# Runtime data
pids
*.pid
*.seed

# Directory for instrumented libs generated by jscoverage/JSCover
lib-cov

# Coverage directory used by tools like istanbul
coverage

# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files)
.grunt

# node-waf configuration
.lock-wscript

# Compiled binary addons (http://nodejs.org/api/addons.html)
build/Release

# Dependency directory
# https://www.npmjs.org/doc/misc/npm-faq.html#should-i-check-my-node_modules-folder-into-git
node_modules

#dist folder
dist

# IDEA/Webstorm project files
.idea
*.iml

#VSCode metadata
.vscode

# Mac files
.DS_Store

# R files
.Rproj.user
.Rhistory
.RData
.Ruserdata

# VSCode
*.code-workspace

# Python files
python/__pycache__/**/*

# Created by https://www.gitignore.io/api/jupyternotebooks
# Edit at https://www.gitignore.io/?templates=jupyternotebooks

### JupyterNotebooks ###
# gitignore template for Jupyter Notebooks
# website: http://jupyter.org/

.ipynb_checkpoints
*/.ipynb_checkpoints/*

# IPython
profile_default/
ipython_config.py

# Remove previous ipynb_checkpoints
#   git rm -r .ipynb_checkpoints/

# End of https://www.gitignore.io/api/jupyternotebooks

# Ignore PDBs
pymol/pdbs/**/*

# Ignore all notebooks
notebooks/**

# Old versions
versions/**

# Server pycache
server/decrypt_function/__pycache__/**

# Snakemake files
example_data/**
.snakemake/**
workflow*/.snakemake/**

workflow*/**/__pycache__/**

# Ignore data folder/links
data/**
data_genbank/**
data_custom/**

# Ignore server passwords
server/htpasswd

# Ignore site deployment scripts
build/deploy.sh
push_data.sh
daily_update.sh
update_gisaid.sh

/src/assets/data_package.json.gz