https://github.com/vsbuffalo/paradox_variation
Tip revision: 8fa6b5834f6536319b1e5cd9722ca02d317183df authored by Vince Buffalo on 12 August 2021, 01:04:21 UTC
updated ms
updated ms
Tip revision: 8fa6b58
leffler_et_al_2012.tsv
Latin name Common name Phylum Class Total loci Mean diversity/bp across loci (%); (populations separated by semi-colon) ThetaW or Pi Type of chromosome Type of site Sampling strategy Reference (PMID) Mating system Habitat Range category Included in main analysis (Y/N) Included in sex-autosome comparison (Y/N) size size_source size_notes
Acyrthosiphon pisum Pea aphid Arthropoda Insecta 4 0.145;0.245;0.23;0.355 Pi Sex non-coding "Multiple populations, separately" 19470181 Partial selfing Terrestrial Cosmopolitan Y Y
Acyrthosiphon pisum Pea aphid Arthropoda Insecta 4 0.845;0.82;0.92;0.94 Pi Autosome non-coding "Multiple populations, separately" 19470181 Partial selfing Terrestrial Cosmopolitan Y Y
Aedes aegypti Mosquito Arthropoda Insecta 25 1.421 Pi Autosome non-coding Unknown 14986924 Obligatory outcrossing Terrestrial Cosmopolitan Y N
Agelaius phoeniceus Red-winged blackbirds Chordata Aves 3 0.59 Pi Autosome intronic "Multiple populations, combined" 15822606 Obligatory outcrossing Terrestrial Broad endemic Y N 0.22 https://animaldiversity.org/accounts/Agelaius_phoeniceus/
Ailuropoda melanoleuca Giant panda Chordata Mammalia chromosome-wide 0.066 Pi Sex chromosome-wide One population 20010809 Obligatory outcrossing Terrestrial Narrow endemic Y Y 1.53924 WP
Ailuropoda melanoleuca Giant panda Chordata Mammalia genome-wide 0.135 Pi Autosome genome-wide One population 20010809 Obligatory outcrossing Terrestrial Narrow endemic Y Y 1.53924 WP
Amphimedon queenslandica Sponge Porifera Demospongiae genome-wide 2.37 Pi Autosome genome-wide One population 20686567 Partial selfing Marine Broad endemic Y N 1.50E-01 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130542/ Figure 1A
Anopheles arabiensis Mosquito Arthropoda Insecta 3 2.2 Pi Autosome mixed "Multiple populations, combined" 12947038 Obligatory outcrossing Terrestrial Broad endemic Y N 0.00295 https://www.ncbi.nlm.nih.gov/pubmed/15669379 wingspan length
Anopheles baimaii Mosquito Arthropoda Insecta 3 0.61;0.553;0.46 Pi Autosome mixed "Multiple populations, separately" 20444081 Obligatory outcrossing Terrestrial Broad endemic Y N
Anopheles cruzii Mosquito Arthropoda Insecta 6 1.856;1.022 Pi Autosome mixed "Multiple populations, separately" 20356389 Obligatory outcrossing Terrestrial Broad endemic Y N
Anopheles dirus Mosquito Arthropoda Insecta 3 0.98;0.963 Pi Autosome mixed "Multiple populations, separately" 20444081 Obligatory outcrossing Terrestrial Broad endemic Y N
Anopheles gambiae Mosquito Arthropoda Insecta 3 2.88 Pi Autosome mixed "Multiple populations, combined" 12947038 Obligatory outcrossing Terrestrial Broad endemic Y N 0.00295 https://www.ncbi.nlm.nih.gov/pubmed/15669379 wingspan length
Anopheles melas Mosquito Arthropoda Insecta 3 0.57 Pi Autosome mixed "Multiple populations, combined" 12947038 Obligatory outcrossing Terrestrial Broad endemic Y N
Anopheles merus Mosquito Arthropoda Insecta 3 1.24 Pi Autosome mixed "Multiple populations, combined" 12947038 Obligatory outcrossing Terrestrial Broad endemic Y N 0.00303 https://www.ncbi.nlm.nih.gov/pubmed/15669379 wingspan length
Anopheles minimus Mosquito Arthropoda Insecta 8 0.425 Pi Sex intronic One population 21251999 Obligatory outcrossing Terrestrial Broad endemic Y N
Anopheles quadriannulatus Mosquito Arthropoda Insecta 3 2.28 Pi Autosome mixed "Multiple populations, combined" 12947038 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0055 https://animaldiversity.org/accounts/Anopheles_quadrimaculatus/#physical_description
Anopheles scanloni Mosquito Arthropoda Insecta 3 0.58 Pi Autosome mixed One population 20444081 Obligatory outcrossing Terrestrial Narrow endemic Y N
Aphanarthrum subglabrum/glabrum Bark beetle Arthropoda Insecta 3 0.233;0.187;0.147 Pi Autosome mixed "Multiple populations, separately" 16911212 Obligatory outcrossing Terrestrial Island Y N 0.00155 http://treatment.plazi.org/id/EA4387F9FF99FFF6A898F64553F6F8EF genus level
Apis cerana Eastern honey bee Arthropoda Insecta 6 0.848 Pi Autosome non-coding "Multiple populations, combined" 17065615 Partial selfing Terrestrial Broad endemic Y N
Apis mellifera Western honey bee Arthropoda Insecta 6 0.848 Pi Autosome non-coding "Multiple populations, combined" 17065615 Partial selfing Terrestrial Cosmopolitan Y N
Aquila clanga/pomarina Greater/Lesser spotted eagle Chordata Aves 15 0.0743;0.0763 Pi Sex intronic "Multiple populations, separately" 21492478 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.65 WP
Aquila clanga/pomarina Greater/Lesser spotted eagle Chordata Aves 36 0.132;0.0966 Pi Autosome intronic "Multiple populations, separately" 21492478 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.65 WP
Aquilegia formosa/pubescens Crimson/Sierra columbine Magnoliophyta Magnoliopsida 8 0.235;0.221 Pi Autosome synonymous "Multiple populations, separately" 20098727 Partial selfing Terrestrial Broad endemic Y N 0.6 https://www.gardenia.net/plant/aquilegia-formosa-western-columbine
Arabidopsis halleri Rockcress Magnoliophyta Magnoliopsida 8 1.502 Pi Autosome silent "Multiple populations, combined" 15020431 Obligatory outcrossing Terrestrial Broad endemic Y N
Arabidopsis lyrata Rockcress Magnoliophyta Magnoliopsida 77 1.35;1.29;0.71;0.97;0.55;0.6 Pi Autosome silent "Multiple populations, separately" 18545707 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.25 WP
Arabidopsis thaliana Thale cress Magnoliophyta Magnoliopsida 876 0.55 Pi Autosome 4-fold degenerate "Multiple populations, combined" 15907155 Partial selfing Terrestrial Cosmopolitan Y N
Arabidopsis thaliana Thale cress Magnoliophyta Magnoliopsida 876 0.61 Pi Autosome non-coding "Multiple populations, combined" 15907155 Partial selfing Terrestrial Cosmopolitan Y N
Arabidopsis thaliana Thale cress Magnoliophyta Magnoliopsida 876 0.65 Pi Autosome intronic "Multiple populations, combined" 15907155 Partial selfing Terrestrial Cosmopolitan Y N
Bactrocera depressa Pumpkin Fruit Fly Arthropoda Insecta 3 0.23 Pi Autosome mixed "Multiple populations, combined" 14629375 Obligatory outcrossing Terrestrial Broad endemic Y N 0.00745 https://www.cabi.org/isc/datasheet/8741 wingspan length
Balaenoptera bonaerensis Antarctic minke whale Chordata Mammalia 11 0.387 Pi Autosome intronic "Multiple populations, combined" 20025655 Obligatory outcrossing Marine Cosmopolitan Y N 5.4864 EOL
Boechera stricta Drummond's rockress Magnoliophyta Magnoliopsida 82 0.35 Pi Autosome silent "Multiple populations, combined" 19104077 Partial selfing Terrestrial Broad endemic Y N 0.6 WP
Caenorhabditis briggsae Nematode Nematoda Secernentea 3 0.013;0.013 Pi Autosome silent "Multiple populations, separately" 18073782 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis briggsae Nematode Nematoda Secernentea 3 0.023;0 Pi Sex silent "Multiple populations, separately" 18073782 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis briggsae Nematode Nematoda Secernentea 3 0.119;0.006 Pi Autosome silent "Multiple populations, separately" 16783011 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis briggsae Nematode Nematoda Secernentea 3 0.336;0.002 Pi Sex silent "Multiple populations, separately" 16783011 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis elegans Nematode Nematoda Secernentea 3 0.017 Pi Sex silent "Multiple populations, combined" 18073782 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis elegans Nematode Nematoda Secernentea 3 0.054 Pi Sex silent "Multiple populations, combined" 16272415 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis elegans Nematode Nematoda Secernentea 3 0.373 Pi Autosome silent "Multiple populations, combined" 18073782 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis elegans Nematode Nematoda Secernentea 3 0.37 Pi Autosome silent "Multiple populations, combined" 16272415 Partial selfing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis remanei Nematode Nematoda Secernentea 3 5.67 Pi Autosome silent "Multiple populations, combined" 16951062 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis remanei Nematode Nematoda Secernentea 3 5.67 Pi Sex silent "Multiple populations, combined" 16951062 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Caenorhabditis sp.5 Nematode Nematoda Secernentea 7 6.839 Pi Sex synonymous "Multiple populations, combined" 20958820 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.0014 http://nemaplex.ucdavis.edu/Ecology/EcophysiologyParms/GenusspecPageBodySizeParmsDDResult.aspx?Genspec=Caenorhabditis%20elegans genus level
Callithrix jacchus Common marmoset Chordata Mammalia 1046 0.123 Pi Autosome synonymous One population 22207615 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.18669 WP
Canis latrans/lupus "Coyote, grey wolf" Chordata Mammalia 10 0.202;0.108;0.155;0.180;0.211 Pi Autosome intronic "Multiple populations, separately" 18647238 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.80772 WP
Canis lupus Grey wolf Chordata Mammalia 11 0.038 Pi Sex intronic "Multiple populations, combined" 14595096 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.80772 WP
Capsella grandiflora Shepardspurse Magnoliophyta Magnoliopsida 39 3.202 Pi Autosome synonymous "Multiple populations, combined" 19228944 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.3 Tyler Kent personal communication
Capsella rubella Shepardspurse Magnoliophyta Magnoliopsida 39 0.666 Pi Autosome synonymous "Multiple populations, combined" 19228944 Partial selfing Terrestrial Cosmopolitan Y N 0.2 https://www2.dijon.inrae.fr/hyppa/hyppa-a/capru_ah.htm
Cecidostiba fungosa Oak gall parasitoid wasp Arthropoda Insecta 17 1.088 Pi Autosome synonymous One population 20455927 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0018 http://tb.plazi.org/GgServer/html/03DD61577C09FFDAFF2EC58EFD592046
Cecidostiba fungosa Oak gall parasitoid wasp Arthropoda Insecta 17 1.165 Pi Autosome intronic One population 20455927 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0018 http://tb.plazi.org/GgServer/html/03DD61577C09FFDAFF2EC58EFD592046
Ceratitis capitata Mediterranean fruit fly Arthropoda Insecta 4 2.951 Pi Autosome intronic "Multiple populations, combined" 9633100 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.004 https://en.wikipedia.org/wiki/Ceratitis_capitata#Adult
Chlamydomonas reinhardtii Green alga Chlorophyta Chlorophyceae 5 2.086 Pi Autosome synonymous One population 18495022 Partial selfing Terrestrial and freshwater Cosmopolitan Y N
Chlamydomonas reinhardtii Green alga Chlorophyta Chlorophyceae 7 3.613 Pi Autosome intronic One population 18495022 Partial selfing Terrestrial and freshwater Cosmopolitan Y N
Chlorocebus aethiops Vervet monkey Chordata Mammalia 1116 0.233 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.458 WP
Cichla pleiozona Peacock bass Chordata Actinopterygii 5 0.3;0.7;0.3;2.6;1;1.3 Pi Autosome intronic "Multiple populations, separately" 20817108 Obligatory outcrossing Freshwater Narrow endemic Y N 0.4572 "https://mydigitalpublication.com/publication/?i=474148&article_id=2956771&view=articleBrowser#{%22issue_id%22:474148,%22view%22:%22articleBrowser%22,%22publication_id%22:%2253925%22,%22article_id%22:%222956771%22}"
Ciona intestinalis A Sea squirt Chordata Ascidiacea 3 0.99 Pi Autosome non-coding "Multiple populations, combined" 20403444 Obligatory outcrossing Marine Cosmopolitan Y N 0.2 WP
Ciona intestinalis B Sea squirt Chordata Ascidiacea 3 4.017 Pi Autosome non-coding "Multiple populations, combined" 20403444 Obligatory outcrossing Marine Broad endemic Y N 0.2 WP
Ciona roulei Sea squirt Chordata Ascidiacea 5 3.238 Pi Autosome mixed One population 20403444 Obligatory outcrossing Marine Narrow endemic Y N 0.2 WP genus level
Ciona savignyi Sea squirt Chordata Ascidiacea genome-wide 8.01 Pi Autosome 4-fold degenerate One population 17372217 Obligatory outcrossing Marine Broad endemic Y N 0.15 https://invasions.si.edu/nemesis/calnemo/SpeciesSummary.jsp?TSN=-122
Crassostrea gigas Pacific oyster Mollusca Bivalvia 27 3.33 Pi Autosome intronic One population 17616269 Partial selfing Marine Broad endemic Y N
Crassostrea gigas Pacific oyster Mollusca Bivalvia 33 3.306 Pi Autosome synonymous One population 17616269 Partial selfing Marine Broad endemic Y N
Cryptococcus neoformans Yeast Basidiomycota Tremellomycetes 7 0.643;0.0843;0.729;0.614 Pi Autosome mixed "Multiple populations, separately" 21573144 Partial selfing Terrestrial Cosmopolitan Y N
Cryptomeria japonica Japanese cedar (sugi) Pinophyta Pinopsida 3 0.619 Pi Autosome intronic "Multiple populations, combined" 12930759 Partial selfing Terrestrial Cosmopolitan Y N
Cryptomeria japonica Japanese cedar (sugi) Pinophyta Pinopsida 7 0.421 Pi Autosome synonymous "Multiple populations, combined" 12930759 Partial selfing Terrestrial Cosmopolitan Y N
Danio rerio Zebrafish Chordata Actinopterygii 400 0.54 ThetaW Autosome silent Unknown 16533913 Obligatory outcrossing Freshwater Broad endemic Y N
Daphnia arenata Water flea Arthropoda Crustacea 6 0.172 Pi Autosome synonymous "Multiple populations, combined" 19304589 Partial selfing Freshwater Narrow endemic Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia arenata Water flea Arthropoda Crustacea 6 0.248 Pi Autosome intronic "Multiple populations, combined" 19304589 Partial selfing Freshwater Narrow endemic Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia magna Water flea Arthropoda Crustacea 8 1.128 Pi Autosome non-coding "Multiple populations, combined" 19299338 Partial selfing Freshwater Cosmopolitan Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia magna Water flea Arthropoda Crustacea 8 1.508 Pi Autosome synonymous "Multiple populations, combined" 19299338 Partial selfing Freshwater Cosmopolitan Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia obtusa Water flea Arthropoda Crustacea 6 0.938 Pi Autosome synonymous "Multiple populations, combined" 19304589 Selfing Freshwater Broad endemic Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia obtusa Water flea Arthropoda Crustacea 6 1.415 Pi Autosome intronic "Multiple populations, combined" 19304589 Selfing Freshwater Broad endemic Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia pulex Water flea Arthropoda Crustacea 7 2.203 Pi Autosome synonymous "Multiple populations, combined" 19299338 Partial selfing Freshwater Cosmopolitan Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia pulicaria Water flea Arthropoda Crustacea 6 1.587 Pi Autosome synonymous "Multiple populations, combined" 19304589 Partial selfing Freshwater Narrow endemic Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Daphnia pulicaria Water flea Arthropoda Crustacea 6 2.458 Pi Autosome intronic "Multiple populations, combined" 19304589 Partial selfing Freshwater Narrow endemic Y N 0.002 https://academic.oup.com/plankt/article-pdf/27/6/531/4322477/fbi029.pdf genus level
Dasypus novemcinctus Nine-banded armadillo Chordata Mammalia 2441 0.153 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.7 https://naturalhistory2.si.edu/smsfp/IRLspec/Dasypus_novemcinctus.htm
Daubentonia madagascariensis Aye-aye Chordata Mammalia 1175 0.073 Pi Autosome synonymous "Multiple populations, combined" 22207615 Obligatory outcrossing Terrestrial Island Y N 0.4064 EOL
Drosophila albomicans Fruit fly Arthropoda Insecta 5 1.454 Pi Sex silent "Multiple populations, combined" 17014741 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila americana Fruit fly Arthropoda Insecta 10 2.52 Pi Autosome synonymous "Multiple populations, combined" 17507679 Obligatory outcrossing Terrestrial Broad endemic Y Y
Drosophila americana Fruit fly Arthropoda Insecta 5 1.44 Pi Sex intronic "Multiple populations, combined" 17507679 Obligatory outcrossing Terrestrial Broad endemic Y Y
Drosophila americana Fruit fly Arthropoda Insecta 7 1.786 Pi Autosome intronic "Multiple populations, combined" 17507679 Obligatory outcrossing Terrestrial Broad endemic Y Y
Drosophila americana Fruit fly Arthropoda Insecta 8 1.138 Pi Sex synonymous "Multiple populations, combined" 17507679 Obligatory outcrossing Terrestrial Broad endemic Y Y
Drosophila ananassae Fruit fly Arthropoda Insecta 10 0.27;0.24;0.62;0.63;0.57;0.74;0.62;0.7;1.08;0.94;1.13;1.24;1.14;1.12;0.59;0.98 Pi Sex intronic "Multiple populations, separately" 15611168 Partial selfing Terrestrial Cosmopolitan Y N
Drosophila ananassae Fruit fly Arthropoda Insecta 14 1.91 Pi Sex synonymous One population 20015359 Partial selfing Terrestrial Cosmopolitan Y Y
Drosophila ananassae Fruit fly Arthropoda Insecta 29 2.36 Pi Autosome synonymous One population 20015359 Partial selfing Terrestrial Cosmopolitan Y Y
Drosophila arizonae Cactophilic Drosophila Arthropoda Insecta 10 1.13 Pi Sex mixed "Multiple populations, combined" 17080365 Obligatory outcrossing Terrestrial Broad endemic Y Y
Drosophila arizonae Cactophilic Drosophila Arthropoda Insecta 8 0.812 Pi Autosome mixed "Multiple populations, combined" 17080365 Obligatory outcrossing Terrestrial Broad endemic Y Y
Drosophila arizonae Cactophilic Drosophila Arthropoda Insecta 8 0.845 Pi Autosome mixed "Multiple populations, combined" 17614914 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila bipectinata Fruit fly Arthropoda Insecta 5 2.01 Pi Autosome non-coding "Multiple populations, combined" 16089034 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila bogotana Fruit fly Arthropoda Insecta 3 0.13 Pi Sex non-coding "Multiple populations, combined" 11919289 Obligatory outcrossing Terrestrial Narrow endemic Y Y
Drosophila bogotana Fruit fly Arthropoda Insecta 6 0.622 Pi Autosome non-coding "Multiple populations, combined" 11919289 Obligatory outcrossing Terrestrial Narrow endemic Y Y
Drosophila buzzatii Fruit fly Arthropoda Insecta 3 1.936 Pi Autosome anonymous One population 12716995 Obligatory outcrossing Terrestrial Cosmopolitan Y N
Drosophila kepulauana Fruit fly Arthropoda Insecta 5 2.054 Pi Sex silent "Multiple populations, combined" 17014741 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila kikkawai Fruit fly Arthropoda Insecta 7 3.23 Pi Autosome silent One population 15056933 Obligatory outcrossing Terrestrial Cosmopolitan Y N
Drosophila kohkoa Fruit fly Arthropoda Insecta 5 3.036 Pi Sex silent "Multiple populations, combined" 17014741 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila malerkotliana Fruit fly Arthropoda Insecta 5 1.68 Pi Autosome non-coding "Multiple populations, combined" 16089034 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila mauritiana Fruit fly Arthropoda Insecta 6 1.76;1.05 Pi Sex synonymous "Multiple populations, separately" 21599771 Obligatory outcrossing Terrestrial Island Y N
Drosophila melanogaster Fruit fly Arthropoda Insecta 105 2.21 Pi Sex 4-fold degenerate One population 21173424 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100750
Drosophila melanogaster Fruit fly Arthropoda Insecta 105 2.21 Pi Sex intronic One population 21173424 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100750
Drosophila melanogaster Fruit fly Arthropoda Insecta 16 1.33;1.65 Pi Autosome synonymous "Multiple populations, separately" 11230529 Obligatory outcrossing Terrestrial Cosmopolitan N Y 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100750
Drosophila melanogaster Fruit fly Arthropoda Insecta 252 1.72 Pi Autosome non-coding "Multiple populations, combined" 17284599 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100751
Drosophila melanogaster Fruit fly Arthropoda Insecta 252 2.32 Pi Autosome synonymous "Multiple populations, combined" 17284599 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100752
Drosophila melanogaster Fruit fly Arthropoda Insecta 259;249 0.48;1.17 Pi Sex silent "Multiple populations, separately" 17660560 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100753
Drosophila melanogaster Fruit fly Arthropoda Insecta 378;53 0.66;1.04 Pi Autosome silent "Multiple populations, separately" 17660560 Obligatory outcrossing Terrestrial Cosmopolitan N Y 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100754
Drosophila melanogaster Fruit fly Arthropoda Insecta 5 1.16;2.42 Pi Sex synonymous "Multiple populations, separately" 11230529 Obligatory outcrossing Terrestrial Cosmopolitan N Y 0.0025 https://bionumbers.hms.harvard.edu/bionumber.aspx?id=100755
Drosophila miranda Fruit fly Arthropoda Insecta 13 0.34 Pi Sex synonymous "Multiple populations, combined" 17028331 Obligatory outcrossing Terrestrial Narrow endemic Y Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 13 0.36 Pi Autosome non-coding "Multiple populations, combined" 17028331 Obligatory outcrossing Terrestrial Narrow endemic Y Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 13 0.37 Pi Autosome intronic "Multiple populations, combined" 17028331 Obligatory outcrossing Terrestrial Narrow endemic Y Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 13 0.45 Pi Sex non-coding "Multiple populations, combined" 17028331 Obligatory outcrossing Terrestrial Narrow endemic Y Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 13 0.53 Pi Autosome synonymous "Multiple populations, combined" 17028331 Obligatory outcrossing Terrestrial Narrow endemic Y Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 13 0.53 Pi Sex intronic "Multiple populations, combined" 17028331 Obligatory outcrossing Terrestrial Narrow endemic Y Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 37 0.664 Pi Autosome synonymous "Multiple populations, combined" 20516497 Obligatory outcrossing Terrestrial Narrow endemic Y Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 39 0.662 Pi Sex synonymous "Multiple populations, combined" 20516497 Obligatory outcrossing Terrestrial Narrow endemic N Y 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila miranda Fruit fly Arthropoda Insecta 91 0.621 Pi Sex synonymous "Multiple populations, combined" 19091130 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.00295 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila mojavensis Cactophilic Drosophila Arthropoda Insecta 10 0.85;0.54 Pi Sex mixed "Multiple populations, separately" 17080365 Obligatory outcrossing Terrestrial Narrow endemic Y Y
Drosophila mojavensis Cactophilic Drosophila Arthropoda Insecta 8 0.512;0.688 Pi Autosome mixed "Multiple populations, separately" 17080365 Obligatory outcrossing Terrestrial Narrow endemic N Y
Drosophila mojavensis Cactophilic Drosophila Arthropoda Insecta 8 0.781 Pi Autosome mixed "Multiple populations, combined" 17614914 Obligatory outcrossing Terrestrial Narrow endemic Y N
Drosophila nasuta Fruit fly Arthropoda Insecta 5 0.944 Pi Sex silent "Multiple populations, combined" 17014741 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila navojoa Cactophilic Drosophila Arthropoda Insecta 7 0.804 Pi Autosome mixed "Multiple populations, combined" 17614914 Obligatory outcrossing Terrestrial Narrow endemic Y N
Drosophila novamexicana Fruit fly Arthropoda Insecta 3 0.28 Pi Sex non-coding "Multiple populations, combined" 18482259 Obligatory outcrossing Terrestrial Narrow endemic Y Y
Drosophila novamexicana Fruit fly Arthropoda Insecta 6 0.202 Pi Autosome non-coding "Multiple populations, combined" 18482259 Obligatory outcrossing Terrestrial Narrow endemic Y Y
Drosophila parabipectinata Fruit fly Arthropoda Insecta 5 1.33 Pi Autosome non-coding "Multiple populations, combined" 16089034 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila persimilis Fruit fly Arthropoda Insecta 3 0.89 Pi Sex non-coding "Multiple populations, combined" 11919289 Obligatory outcrossing Terrestrial Narrow endemic Y Y
Drosophila persimilis Fruit fly Arthropoda Insecta 6 0.777 Pi Autosome non-coding "Multiple populations, combined" 11919289 Obligatory outcrossing Terrestrial Narrow endemic Y Y
Drosophila pseudoananassae Fruit fly Arthropoda Insecta 5 1.834 Pi Autosome non-coding "Multiple populations, combined" 16089034 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila pseudoobscura Fruit fly Arthropoda Insecta 37 2.265 Pi Autosome synonymous One population 20516497 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.0026 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila pseudoobscura Fruit fly Arthropoda Insecta 39 1.779 Pi Sex synonymous One population 20516497 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.0026 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila pseudoobscura Fruit fly Arthropoda Insecta chromosome-wide 1.1 Pi Autosome non-coding Unknown 18621713 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0026 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila pseudoobscura Fruit fly Arthropoda Insecta chromosome-wide 1.2 Pi Autosome intronic Unknown 18621713 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0026 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1208619/pdf/377.pdf
Drosophila santomea Fruit fly Arthropoda Insecta 17 2.085 ThetaW Autosome silent "Multiple populations, combined" 15965264 Obligatory outcrossing Terrestrial Island Y N
Drosophila santomea Fruit fly Arthropoda Insecta 26 0.65 Pi Sex intronic One population "Andolfatto, P. (unpublished results)" Obligatory outcrossing Terrestrial Island Y N
Drosophila santomea Fruit fly Arthropoda Insecta 67 1.3 Pi Sex 4-fold degenerate One population "Andolfatto, P. (unpublished results)" Obligatory outcrossing Terrestrial Island Y N
Drosophila sechellia Fruit fly Arthropoda Insecta 3 0.096 Pi Autosome silent "Multiple populations, combined" 19506309 Obligatory outcrossing Terrestrial Island Y Y
Drosophila sechellia Fruit fly Arthropoda Insecta 7 0.114 Pi Sex silent "Multiple populations, combined" 19506309 Obligatory outcrossing Terrestrial Island Y Y
Drosophila simulans Fruit fly Arthropoda Insecta chromosome-wide 1.53 Pi Sex non-coding "Multiple populations, combined" 17988176 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0025 same as D. mel
Drosophila simulans Fruit fly Arthropoda Insecta chromosome-wide 1.66 Pi Sex intronic "Multiple populations, combined" 17988176 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0025
Drosophila simulans Fruit fly Arthropoda Insecta chromosome-wide 1.99 Pi Sex synonymous "Multiple populations, combined" 17988176 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0025
Drosophila simulans Fruit fly Arthropoda Insecta genome-wide 2.04 Pi Autosome non-coding "Multiple populations, combined" 17988176 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0025
Drosophila simulans Fruit fly Arthropoda Insecta genome-wide 2.12 Pi Autosome intronic "Multiple populations, combined" 17988176 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0025
Drosophila simulans Fruit fly Arthropoda Insecta genome-wide 3.52 Pi Autosome synonymous "Multiple populations, combined" 17988176 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 0.0025
Drosophila subobscura Fruit fly Arthropoda Insecta 8 0.988 Pi Autosome silent One population 15687280 Obligatory outcrossing Terrestrial Cosmopolitan Y N
Drosophila sulfurigaster albostrigata Fruit fly Arthropoda Insecta 5 0.858 Pi Sex silent "Multiple populations, combined" 17014741 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila sulfurigaster bilimbata Fruit fly Arthropoda Insecta 5 0 Pi Sex silent "Multiple populations, combined" 17014741 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila sulfurigaster sulfurigaster Fruit fly Arthropoda Insecta 5 0.994 Pi Sex silent "Multiple populations, combined" 17014741 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila teissieri Fruit fly Arthropoda Insecta 26 2.1 Pi Sex intronic "Multiple populations, combined" "Andolfatto, P. (unpublished results)" Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila teissieri Fruit fly Arthropoda Insecta 67 2.9 Pi Sex 4-fold degenerate "Multiple populations, combined" "Andolfatto, P. (unpublished results)" Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila yakuba Fruit fly Arthropoda Insecta 17 2.98 ThetaW Autosome silent "Multiple populations, combined" 15965264 Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila yakuba Fruit fly Arthropoda Insecta 26 1.1 Pi Sex intronic One population "Andolfatto, P. (unpublished results)" Obligatory outcrossing Terrestrial Broad endemic Y N
Drosophila yakuba Fruit fly Arthropoda Insecta 67 1.9 Pi Sex 4-fold degenerate One population "Andolfatto, P. (unpublished results)" Obligatory outcrossing Terrestrial Broad endemic Y N
Eichhornia paniculata Brazilian water hyacinth Magnoliophyta Liliopsida 10 0.22;0.08;0.28;0.24;0.2;0.12;0.26;0.24;0.09;0.17;0.15;0.16;0.07;0.13;0.18;0.17;0.08;0.03;0.15;0.21;0.13;0.07;0.03;0.01;0.02 Pi Autosome silent "Multiple populations, separately" 19917767 Partial selfing Freshwater Broad endemic Y N
Eschrichtius robustus Gray whale Chordata Mammalia 7 0.117 Pi Autosome intronic One population 17848511 Obligatory outcrossing Marine Broad endemic Y N 11.8872 EOL
Eulemur coronatus Crowned lemur Chordata Mammalia 1133 0.281 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Island Y N 0.3556 EOL
Eulemur mongoz Mongoose lemur Chordata Mammalia 1257 0.244 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Island Y N 0.82296 EOL
Ficedula albicollis Collared flycatcher Chordata Aves 16 0.38 Pi Autosome intronic One population 15956661 Obligatory outcrossing Terrestrial Broad endemic Y N 0.1275 WP
Ficedula albicollis Collared flycatcher Chordata Aves 23 0.373 Pi Autosome mixed One population 15956661 Obligatory outcrossing Terrestrial Broad endemic N Y 0.1275 WP
Ficedula albicollis Collared flycatcher Chordata Aves 74 0.316 Pi Sex intronic "Multiple populations, combined" 20629730 Obligatory outcrossing Terrestrial Broad endemic Y N 0.1275 WP
Ficedula albicollis Collared flycatcher Chordata Aves 9 0.12 Pi Sex mixed One population 15956661 Obligatory outcrossing Terrestrial Broad endemic N Y 0.1275 WP
Ficedula hypoleuca Pied Flycatcher Chordata Aves 16 0.31 Pi Autosome intronic One population 15956661 Obligatory outcrossing Terrestrial Broad endemic Y N 0.12954 EOL
Ficedula hypoleuca Pied Flycatcher Chordata Aves 23 0.27 Pi Autosome mixed One population 15956661 Obligatory outcrossing Terrestrial Broad endemic N Y 0.12954 EOL
Ficedula hypoleuca Pied Flycatcher Chordata Aves 74 0.182 Pi Sex intronic "Multiple populations, combined" 20629730 Obligatory outcrossing Terrestrial Broad endemic Y N 0.12954 EOL
Ficedula hypoleuca Pied Flycatcher Chordata Aves 9 0.141 Pi Sex mixed One population 15956661 Obligatory outcrossing Terrestrial Broad endemic N Y 0.12954 EOL
Galago moholi Mohol bushbaby Chordata Mammalia 414 0.204 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.3683 EOL
Gasterosteus aculeatus Three-spined stickleback Chordata Actinopterygii genome-wide 0.216;0.25;0.203;0.227;0.268 Pi Autosome genome-wide "Multiple populations, separately" 20195501 Obligatory outcrossing Marine and freshwater Cosmopolitan Y N
Gorilla beringei/gorilla Eastern/Western Gorilla Chordata Mammalia 14;16 0.0873;0.151 Pi Autosome non-coding "Multiple populations, separately" 17065595 Obligatory outcrossing Terrestrial Narrow endemic Y N 1.675 https://animaldiversity.org/accounts/Gorilla_beringei/
Gryllus firmus Sand field cricket Arthropoda Insecta 3 0.889 Pi Autosome intronic "Multiple populations, combined" 19619226 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0058 https://link.springer.com/article/10.1007/s10905-013-9425-1
Gryllus pennsylvanicus Field cricket Arthropoda Insecta 3 0.928 Pi Autosome intronic "Multiple populations, combined" 19619226 Obligatory outcrossing Terrestrial Broad endemic Y N 0.022 WP genus level
Gulo gulo Wolverine Chordata Mammalia 10 0.0064;0.0516 Pi Autosome intronic "Multiple populations, separately" 18647238 Obligatory outcrossing Terrestrial Broad endemic Y N 0.86 WP
Heliconius cydno Cydno longwing butterfly Arthropoda Insecta 13 2.425 Pi Autosome mixed "Multiple populations, combined" 16892975 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0405 http://tolweb.org/Heliconius_cydno/72251 wingspan length
Heliconius hecale Tiger longwing butterfly Arthropoda Insecta 12 2.106 Pi Autosome mixed "Multiple populations, combined" 16892975 Obligatory outcrossing Terrestrial Broad endemic Y N 0.018 http://tolweb.org/Heliconius_hecale/72904
Heliconius melpomene Postman butterfly Arthropoda Insecta 13 1.996 Pi Autosome mixed "Multiple populations, combined" 16892975 Obligatory outcrossing Terrestrial Broad endemic Y N
Heliconius pachinus Pachinus longwing butterfly Arthropoda Insecta 13 1.881 Pi Autosome mixed "Multiple populations, combined" 16892975 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.0375 http://tolweb.org/Heliconius_hewitsoni/72941 wingspan length
Histoplasma capsulatum Fungus Ascomycota Eurotiomycetes 4 2.195 Pi Autosome mixed "Multiple populations, combined" 14629354 Partial selfing NA Cosmopolitan Y N
Homo sapiens Human Chordata Mammalia 1052 0.119 Pi Autosome synonymous "Multiple populations, combined" 22207615 Obligatory outcrossing Terrestrial Cosmopolitan Y N 1.64592 WP
Homo sapiens Human Chordata Mammalia chromosome-wide 0.09;0.07;0.075 Pi Sex non-coding "Multiple populations, separately" 21330547 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 1.64592 WP
Homo sapiens Human Chordata Mammalia genome-wide 0.13;0.10;0.09 Pi Autosome non-coding "Multiple populations, separately" 21330547 Obligatory outcrossing Terrestrial Cosmopolitan Y Y 1.64592 WP
Hoolock leuconedys Eastern hoolock gibbon Chordata Mammalia 3 0.21 Pi Autosome unclear Unknown 21368318 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.75 http://www.gibbons.de/main2/08teachtext/facthoolock/hoolockfact.html
Hylobates agilis/lar/moloch/pileatus Agile/Lar/Javan/Pileated gibbon Chordata Mammalia 4;3;3;4 0.22;0.213;0.29;0.298 Pi Autosome unclear "Multiple populations, separately" 21368318 Obligatory outcrossing Terrestrial Broad endemic Y N 0.5375 WP
Ixodes ricinus Common tick Arthropoda Insecta 4 0.87 Pi Autosome mixed "Multiple populations, combined" 20946897 Obligatory outcrossing Terrestrial Broad endemic Y N 0.011 WP
Limenitis arthemis American admiral butterfly Arthropoda Insecta 5 1.304;1.552 Pi Autosome anonymous "Multiple populations, separately" 18331459 Obligatory outcrossing Terrestrial Broad endemic Y N 0.079 https://www.butterfliesandmoths.org/species/Limenitis-arthemis
Lutzomyia intermedia Brazilian sand fly Arthropoda Insecta 10 1.165 Pi Autosome mixed One population 18474115 Obligatory outcrossing Terrestrial Broad endemic Y N 0.003 WP genus level
Lutzomyia whitmani Brazilian sand fly Arthropoda Insecta 10 1.592 Pi Autosome mixed One population 18474115 Obligatory outcrossing Terrestrial Broad endemic Y N 0.003 WP genus level
Lynx lynx Eurasian lynx Chordata Mammalia 10 0.0103 Pi Autosome intronic One population 18647238 Obligatory outcrossing Terrestrial Broad endemic Y N 0.87 https://www.britannica.com/animal/lynx-mammal
Lynx lynx Eurasian lynx Chordata Mammalia 5 0.016 Pi Sex intronic "Multiple populations, combined" 14595096 Obligatory outcrossing Terrestrial Broad endemic Y N 0.87 https://www.britannica.com/animal/lynx-mammal
Macaca mulatta Rhesus macaque Chordata Mammalia 1079 0.288 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.50038 EOL
Malurus melanocephalus Red-backed fairy wren Chordata Aves 29 1.6;1.4;1.5 Pi Autosome anonymous "Multiple populations, separately" 19087188 Obligatory outcrossing Terrestrial Broad endemic Y N 0.115 WP
Malurus melanocephalus Red-backed fairy wren Chordata Aves 6 0.9;0.8;1.0 Pi Autosome intronic "Multiple populations, separately" 19087188 Obligatory outcrossing Terrestrial Broad endemic Y N 0.115 WP
Melanoplus oregonensis Oregon short-wing grasshopper Arthropoda Insecta 5 0.935 Pi Autosome anonymous "Multiple populations, combined" 17348914 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.03125 http://entnemdept.ufl.edu/ghopper/spur3.pdf genus level
Mesobuthus cyprius/gibbosus Mediterranean scorpion Arthropoda Chelicerata 9 1.7856;2.014;0.828;0.369;1.262 Pi Autosome mixed "Multiple populations, separately" 15612292 Obligatory outcrossing Terrestrial Broad endemic Y N 0.06 WP
Microtus agrestis Field vole Chordata Mammalia 10 0.08 Pi Sex intronic "Multiple populations, combined" 14595096 Obligatory outcrossing Terrestrial Broad endemic Y N 0.1 WP
Monodelphis domestica Gray short-tailed opossum Chordata Mammalia 892 0.164 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.14732 EOL
Mus musculus castaneus House mouse Chordata Mammalia 6 0.265;0.038 Pi Sex silent "Multiple populations, separately" 17287527 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.0875 WP
Mus musculus castaneus House mouse Chordata Mammalia 65 0.66 Pi Autosome intronic "Multiple populations, combined" 21059791 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0875 WP
Mus musculus castaneus House mouse Chordata Mammalia 7 0.821;0.608 Pi Autosome non-coding "Multiple populations, separately" 17287527 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.0875 WP
Mus musculus castaneus House mouse Chordata Mammalia 78 0.75 Pi Autosome synonymous "Multiple populations, combined" 21059791 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0875 WP
Mus musculus domesticus House mouse Chordata Mammalia 1335 0.368 Pi Autosome synonymous One population 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0875 WP
Mus musculus domesticus House mouse Chordata Mammalia 4 0.155 Pi Autosome intronic "Multiple populations, combined" 19121002 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0875 WP
Mus musculus domesticus House mouse Chordata Mammalia 5 0.066 Pi Sex intronic "Multiple populations, combined" 18073432 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0875 WP
Mus musculus domesticus House mouse Chordata Mammalia 6 0.123;0.01;0.049 Pi Sex silent "Multiple populations, separately" 17287527 Obligatory outcrossing Terrestrial Broad endemic N Y 0.0875 WP
Mus musculus domesticus House mouse Chordata Mammalia 7 0.325;0.260;0.126 Pi Autosome non-coding "Multiple populations, separately" 17287527 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.0875 WP
Mus musculus musculus House mouse Chordata Mammalia 4 0.198 Pi Autosome intronic "Multiple populations, combined" 19121002 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0875 WP
Mus musculus musculus House mouse Chordata Mammalia 5 0.034 Pi Sex intronic "Multiple populations, combined" 18073432 Obligatory outcrossing Terrestrial Broad endemic Y N 0.0875 WP
Mus musculus musculus House mouse Chordata Mammalia 6 0.095;0.025 Pi Sex silent "Multiple populations, separately" 17287527 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.0875 WP
Mus musculus musculus House mouse Chordata Mammalia 7 0.168;0.142 Pi Autosome non-coding "Multiple populations, separately" 17287527 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.0875 WP
Nasonia vitripennis Parasitoid wasp Arthropoda Insecta 11 0.16;0.16 Pi Autosome silent "Multiple populations, separately" 20087396 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.003 WP
Neurospora crassa Bread mold Ascomycota Ascomycetes genome-wide 0.23;0.24 Pi Autosome genome-wide "Multiple populations, separately" 21282627 Partial selfing Terrestrial Cosmopolitan Y N
Nomascus gabriellae/leucogenys Yellow-cheeked/Northern white-cheeked gibbon Chordata Mammalia 4 0.212;0.265 Pi Autosome unclear "Multiple populations, separately" 21368318 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.7 https://animaldiversity.org/accounts/Nomascus_gabriellae/
Nycticebus coucang Greater slow loris Chordata Mammalia 1004 0.214 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.3048 EOL
Oncorhynchus tshawytscha Chinook salmon Chordata Actinopterygii 3 0.297;0.26;0.203;0.283 Pi Autosome synonymous "Multiple populations, separately" 10886648 Obligatory outcrossing Marine and freshwater Broad endemic Y N
Oryctolagus cuniculus European rabbit Chordata Mammalia 27 0.42;0.358 Pi Sex non-coding "Multiple populations, separately" 20666840 Obligatory outcrossing Terrestrial Broad endemic Y Y
Oryctolagus cuniculus European rabbit Chordata Mammalia 5 0.894;0.792 Pi Autosome silent "Multiple populations, separately" 19015539 Obligatory outcrossing Terrestrial Broad endemic Y Y
Ostrinia nubilalis European cornborer Arthropoda Insecta 3 1.2 Pi Sex mixed "Multiple populations, combined" 16204000 Obligatory outcrossing Terrestrial Cosmopolitan Y N
Pan paniscus Bonobo Chordata Mammalia 26 0.1 Pi Autosome non-coding Unknown 16753568 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.762 WP
Pan troglodytes Chimpanzee Chordata Mammalia 1201 0.206 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.79248 WP
Pan troglodytes Chimpanzee Chordata Mammalia 26 0.2;0.16;0.08 Pi Autosome non-coding "Multiple populations, separately" 16753568 Obligatory outcrossing Terrestrial Broad endemic Y N 0.79248 WP
Pan troglodytes Chimpanzee Chordata Mammalia "420,610 bp" 0.034 Pi Sex unclear Unknown 21054605 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.79248 WP
Pan troglodytes Chimpanzee Chordata Mammalia "861,142 bp of chr 21" 0.081 Pi Autosome unclear Unknown 21054605 Obligatory outcrossing Terrestrial Broad endemic N Y 0.79248 WP
Papilio canadensis Swallowtail Arthropoda Insecta 5 0.92 Pi Sex silent "Multiple populations, combined" 17439621 Obligatory outcrossing Terrestrial Broad endemic Y N 0.115 https://animaldiversity.org/accounts/Papilio_polyxenes/ wingspan length
Papilio dardanus African swallowtail Arthropoda Insecta 6 1.7 Pi Autosome mixed "Multiple populations, combined" 19694948 Obligatory outcrossing Terrestrial Broad endemic Y N 0.075 https://www.britannica.com/animal/Papilio-dardanus wingspan length
Papilio glaucus Swallowtail Arthropoda Insecta 5 1.28 Pi Sex silent "Multiple populations, combined" 17439621 Obligatory outcrossing Terrestrial Broad endemic Y N
Paracoccidioides brasiliensis PS2/PS3/S1 Fungus Ascomycota Eurotiomycetes 13 0.132;0.222;0.213 Pi Autosome mixed "Multiple populations, separately" 16151188 Partial selfing NA Broad endemic Y N
Paracoccidioides lutzii Fungus Ascomycota Eurotiomycetes 13 1.695 Pi Autosome mixed "Multiple populations, combined" 19376249 Partial selfing NA Broad endemic Y N
Paramecium biaurelia Paramecium Ciliophora Ciliatea 10 0.38 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.00015 WP
Paramecium decaurelia Paramecium Ciliophora Ciliatea 10 1.04 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.00012 https://books.google.com/books?id=c3IJguXWa6YC&pg=PA225&dq=%22Paramecium+dodecaurelia%22+length&hl=en&sa=X&ved=2ahUKEwigs9SD0fnmAhVG7J4KHSAZDIEQ6AEwAHoECAAQAg#v=onepage&q=%22Paramecium%20dodecaurelia%22%20length&f=false
Paramecium dodecaurelia Paramecium Ciliophora Ciliatea 10 0.78 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.00012 https://books.google.com/books?id=c3IJguXWa6YC&pg=PA225&dq=%22Paramecium+dodecaurelia%22+length&hl=en&sa=X&ved=2ahUKEwigs9SD0fnmAhVG7J4KHSAZDIEQ6AEwAHoECAAQAg#v=onepage&q=%22Paramecium%20dodecaurelia%22%20length&f=false genus level
Paramecium novaurelia Paramecium Ciliophora Ciliatea 10 0.91 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.0001275 average for species complex
Paramecium octaurelia Paramecium Ciliophora Ciliatea 10 0.36 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.00012 https://www.uniprot.org/proteomes/UP000000600
Paramecium pentaurelia Paramecium Ciliophora Ciliatea 10 0.17 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.00033 WP
Paramecium primaurelia Paramecium Ciliophora Ciliatea 10 2.28 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.0001275 average for species complex
Paramecium quadecaurelia Paramecium Ciliophora Ciliatea 10 3.45 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.0001275 average for species complex
Paramecium septaurelia Paramecium Ciliophora Ciliatea 10 0.34 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.0001275 average for species complex
Paramecium sexaurelia Paramecium Ciliophora Ciliatea 10 0.38 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.0001275 average for species complex
Paramecium tetraurelia Paramecium Ciliophora Ciliatea 10 0.79 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.0001275 average for species complex
Paramecium triaurelia Paramecium Ciliophora Ciliatea 10 0.66 Pi Autosome synonymous "Multiple populations, combined" 19023087 Partial selfing Freshwater Unknown Y N 0.0001275 average for species complex
Peromyscus maniculatus Deer mouse Chordata Mammalia 6 1.313 Pi Autosome silent "Multiple populations, combined" 18716337 Obligatory outcrossing Terrestrial Broad endemic Y N 0.09652 EOL genus level
Phlebotomus ariasi Mediterranean sandfly Arthropoda Insecta 3 0.494;0.672;0.473;0.494;0.468;0.393;0.514;0.416;0.336;0.438;0.455;0.475;0.400;0.423;0.331;0.333;0.164;0.202 Pi Autosome mixed "Multiple populations, separately" 20736970 Obligatory outcrossing Terrestrial Broad endemic Y N 0.00225 WP genus level
Phytophthora capsici Oomycete plant pathogen Heterokontophyta Oomycota 6 0.617 Pi Autosome mixed "Multiple populations, combined" 21486143 Partial selfing NA Cosmopolitan Y N
Phytophthora infestans Potato blight Heterokontophyta Oomycota 4 0.1;0.03;0.0075;0.275;0.0575;0.22 Pi Autosome mixed "Multiple populations, separately" 21303555 Partial selfing NA Cosmopolitan Y N
Picea abies Norway spruce Pinophyta Pinopsida 10 0.709 Pi Autosome silent "Multiple populations, combined" 19639012 Partial selfing Terrestrial Broad endemic Y N
Picea breweriana Brewer spruce Pinophyta Pinopsida 10 0.201 Pi Autosome silent "Multiple populations, combined" 19639012 Partial selfing Terrestrial Narrow endemic Y N 30 WP
Picea glauca White spruce Pinophyta Pinopsida 10 0.905 Pi Autosome silent Unclear 19639012 Partial selfing Terrestrial Broad endemic Y N 21 http://www.missouribotanicalgarden.org/PlantFinder/PlantFinderDetails.aspx?taxonid=252800
Picea mariana Black spruce Pinophyta Pinopsida 10 0.461 Pi Autosome silent Unclear 19639012 Partial selfing Terrestrial Broad endemic Y N 10 WP
Pieris rapae Small white butterfly Arthropoda Insecta 6 2.502;1.791;2.024;2.065 Pi Autosome synonymous "Multiple populations, separately" 20181249 Obligatory outcrossing Terrestrial Cosmopolitan Y N 0.05 https://www.cabi.org/isc/datasheet/41167 wingspan length
Pinus pinaster Maritime pine Pinophyta Pinopsida 4 0.244 Pi Autosome non-coding "Multiple populations, combined" 15948834 Partial selfing Terrestrial Narrow endemic Y N
Pinus pinaster Maritime pine Pinophyta Pinopsida 7 0.028 Pi Autosome synonymous "Multiple populations, combined" 15948834 Partial selfing Terrestrial Narrow endemic Y N
Pinus radiata Monterey pine Pinophyta Pinopsida 4 0.0698 Pi Autosome non-coding One population 15948834 Partial selfing Terrestrial Broad endemic Y N
Pinus radiata Monterey pine Pinophyta Pinopsida 7 0.0754 Pi Autosome synonymous One population 15948834 Partial selfing Terrestrial Broad endemic Y N
Pinus sylvestris Scots pine Pinophyta Pinopsida 11 0.56 Pi Autosome synonymous One population 11801746 Partial selfing Terrestrial Broad endemic Y N 35 WP
Pinus taeda Loblolly pine Pinophyta Pinopsida 19 0.746 Pi Autosome silent "Multiple populations, combined" 15477602 Partial selfing Terrestrial Broad endemic Y N
Plasmodium falciparum Malaria pathogen Apicomplexa Aconoidasida genome-wide 0.126 Pi Autosome non-coding "Multiple populations, combined" 17159979 Partial selfing NA Cosmopolitan Y N
Plasmodium falciparum Malaria pathogen Apicomplexa Aconoidasida genome-wide 0.148 Pi Autosome intronic "Multiple populations, combined" 17159979 Partial selfing NA Cosmopolitan Y N
Plasmodium falciparum Malaria pathogen Apicomplexa Aconoidasida genome-wide 0.151 Pi Autosome 4-fold degenerate "Multiple populations, combined" 17159979 Partial selfing NA Cosmopolitan Y N
Plasmodium vivax Malaria pathogen Apicomplexa Aconoidasida 26 0.0616 Pi Autosome mixed "Multiple populations, combined" 12799466 Partial selfing NA Cosmopolitan Y N
Pongo abelii/pygmaeus Sumatran/Bornean Orangutan Chordata Mammalia 19 0.35;0.27 Pi Autosome non-coding "Multiple populations, separately" 16753568 Obligatory outcrossing Terrestrial Island Y N 0.82296 EOL
Populus balsamifera Balsam poplar Magnoliophyta Magnoliopsida 361 0.35 Pi Autosome intronic "Multiple populations, combined" 20122131 Obligatory outcrossing Terrestrial Broad endemic Y N
Populus balsamifera Balsam poplar Magnoliophyta Magnoliopsida 515 0.45 Pi Autosome synonymous "Multiple populations, combined" 20122131 Obligatory outcrossing Terrestrial Broad endemic Y N
Populus tremula European aspen Magnoliophyta Magnoliopsida 5 1.23;1.52;1.64;1.43 Pi Autosome silent "Multiple populations, separately" 15489521 Obligatory outcrossing Terrestrial Broad endemic Y N
Populus trichocarpa Western black cottonwood Magnoliophyta Magnoliopsida 3 0.449 Pi Autosome silent One population 19228296 Obligatory outcrossing Terrestrial Broad endemic Y N
Propithecus coquereli Coquerels sifaka Chordata Mammalia 1048 0.681 Pi Autosome synonymous "Multiple populations, combined" 22207615 Obligatory outcrossing Terrestrial Island Y N 0.46 https://ielc.libguides.com/sdzg/factsheets/coquerelssifaka/characteristics
Rangifer tarandus Reindeer Chordata Mammalia 4 0.05 Pi Sex intronic "Multiple populations, combined" 14595096 Obligatory outcrossing Terrestrial Broad endemic Y N 1.9 https://animaldiversity.org/accounts/Rangifer_tarandus/#physical_description
Rattus norvegicus Rat Chordata Mammalia genome-wide 0.125 ThetaW Autosome mixed "Multiple populations, combined" 15231757 Obligatory outcrossing Terrestrial Cosmopolitan Y N
Saccharomyces cerevisiae Bakers yeast Ascomycota Saccharomycetes genome-wide 0.14;0.044;0.27 Pi Autosome synonymous "Multiple populations, separately" 20817943 Partial selfing Terrestrial Cosmopolitan Y N
Saccharomyces paradoxus Yeast Ascomycota Saccharomycetes genome-wide 0.21;0.15;0.46 Pi Autosome synonymous "Multiple populations, separately" 20817943 Partial selfing Terrestrial Cosmopolitan Y N
Sceloporus undulatus Eastern fence lizard Chordata Reptilia 19 0.623 Pi Autosome anonymous "Multiple populations, combined" 17611259 Obligatory outcrossing Terrestrial Broad endemic Y N
Silene latifolia Bladder campion Magnoliophyta Magnoliopsida 3 2.42 Pi Sex silent "Multiple populations, combined" 20519224 Obligatory outcrossing Terrestrial Broad endemic Y Y
Silene latifolia Bladder campion Magnoliophyta Magnoliopsida 8 2.88 Pi Autosome silent "Multiple populations, combined" 20519224 Obligatory outcrossing Terrestrial Broad endemic Y Y
Sistrurus catenatus Eastern massasauga rattlesnake Chordata Reptilia 10 0.0235 Pi Autosome anonymous One population 21565006 Obligatory outcrossing Terrestrial Broad endemic Y N 0.68 WP
Sistrurus catenatus Eastern massasauga rattlesnake Chordata Reptilia 8 0.0388 Pi Autosome intronic One population 21565006 Obligatory outcrossing Terrestrial Broad endemic Y N 0.68 WP
Spermophilus parryii Arctic ground squirrel Chordata Mammalia 8 0.259 Pi Autosome anonymous "Multiple populations, combined" 21729045 Obligatory outcrossing Terrestrial Broad endemic Y N 0.39 WP
Strongylocentrotus droebachiensis Green sea urchin Echinodermata Echinoidea 4 1.45 Pi Autosome mixed One population 19222750 Obligatory outcrossing Marine Broad endemic Y N 0.05 WP
Strongylocentrotus pallidus Pale sea urchin Echinodermata Echinoidea 4 2.492 Pi Autosome mixed One population 19222750 Obligatory outcrossing Marine Broad endemic Y N 0.08 https://inverts.wallawalla.edu/Echinodermata/Class%20Echinoidea/Echinoida/Strongylocentrotidae/Strongylocentrotus_pallidus.html
Strongylocentrotus purpuratus Purple sea urchin Echinodermata Echinoidea 4 1.69 Pi Autosome mixed One population 19222750 Obligatory outcrossing Marine Broad endemic Y N 0.1 WP
Symphalangus syndactylus Siamang Chordata Mammalia 4 0.168 Pi Autosome unclear Unknown 21368318 Obligatory outcrossing Terrestrial Narrow endemic Y N 0.57912 EOL
Taeniopygia guttata Zebra finch Chordata Aves 21 1.1;0.23 Pi Autosome non-coding "Multiple populations, separately" 19047416 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.10414 EOL
Taeniopygia guttata Zebra finch Chordata Aves 4 1.09;0.01 Pi Autosome intronic "Multiple populations, separately" 19047416 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.10414 EOL
Taeniopygia guttata Zebra finch Chordata Aves 5 0.32;0.03 Pi Sex intronic "Multiple populations, separately" 19047416 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.10414 EOL
Takifugu rubripes Japanese pufferfish Chordata Actinopterygii genome-wide 0.4 Pi Autosome genome-wide One population 12142439 Obligatory outcrossing Marine Broad endemic Y N 0.4 https://www.uniprot.org/proteomes/UP000005226
Tupaia belangeri Northern tree shrew Chordata Mammalia 1603 0.532 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Broad endemic Y N 0.17 WP genus level
Varecia variegata variegata Black and white ruffed lemur Chordata Mammalia 921 0.375 Pi Autosome synonymous Unknown 22207615 Obligatory outcrossing Terrestrial Island Y N 0.503 https://animaldiversity.org/accounts/Varecia_variegata/#physical_description
Volvox carteri Green alga Chlorophyta Chlorophyceae 6 0.358 Pi Autosome synonymous "Multiple populations, combined" 20430860 Partial selfing Freshwater Unknown Y N
Volvox carteri Green alga Chlorophyta Chlorophyceae 6 0.534 Pi Autosome intronic "Multiple populations, combined" 20430860 Partial selfing Freshwater Unknown Y N
Zonotrichia albicollis White-throated sparrow Chordata Aves 27 0.66 Pi Autosome silent One population 21029465 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.17018 EOL
Zonotrichia albicollis White-throated sparrow Chordata Aves 9 0.0464 Pi Sex silent One population 21029465 Obligatory outcrossing Terrestrial Broad endemic Y Y 0.17018 EOL 