@INCOLLECTION{Hindmarsh83,
  author = {Hindmarsh, A. C.},
  title = {\pkg{ODEPACK}, a Systematized Collection of {ODE} Solvers},
  booktitle = {Scientific Computing, Vol. 1 of IMACS Transactions on Scientific
    Computation},
  publisher = {IMACS / North-Holland},
  year = {1983},
  editor = {Stepleman, R.},
  pages = {55-64},
  address = {Amsterdam}
}

@inproceedings{Leisch02,
  author = {Friedrich Leisch},
  title = {Sweave: Dynamic Generation of Statistical Reports Using
		  Literate Data Analysis},
  booktitle = {Compstat 2002 - Proceedings in Computational
		  Statistics},
  pages = {575-580},
  year = 2002,
  editor = {Wolfgang H{\"a}rdle and Bernd R{\"o}nz},
  publisher = {Physica Verlag, Heidelberg},
  note = {ISBN 3-7908-1517-9},
  url = {http://www.stat.uni-muenchen.de/~leisch/Sweave}
}

@Manual{LINPACK,
  author={J.J. Dongarra and J.R. Bunch and C.B. Moler and G.W. Stewart},
  title={LINPACK Users Guide},
  year={1979},
  note={SIAM}
}

@ARTICLE{Petzoldt03,
  author = {Petzoldt, Thomas},
  title = {R as a Simulation Platform in Ecological Modelling},
  journal = {R News},
  year = {2003},
  volume = {3},
  pages = {8-16},
  number = {3}
}

@BOOK{Press92,
  title = {Numerical Recipes in FORTRAN. The Art of Scientific Computing},
  publisher = {Cambridge University Press},
  year = {1992},
  author = {Press, W H and Teukolsky, S A and Vetterling, W T and Flannery, B
    P},
  edition = {2nd}
}

@MANUAL{R2008,
  title = {\proglang{R}: A Language and Environment for Statistical Computing},
  author = {{R Development Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2008},
  note = {{ISBN} 3-900051-07-0},
  url = {http://www.R-project.org}
}

@Manual{rootSolve,
  title = {rootSolve: Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations},
  author = {Karline Soetaert},
  year = {2009},
  note = {R package version 1.6},
}

@Article{deSolve,
  title = {Solving Differential Equations in R: Package deSolve},
  author = {Karline Soetaert and Thomas Petzoldt and R. Woodrow Setzer},
  journal = {Journal of Statistical Software},
  volume = {33},
  number = {9},
  pages = {1--25},
  year = {2010},
  coden = {JSSOBK},
  issn = {1548-7660},
  url = {http://www.jstatsoft.org/v33/i09},
  keywords = {ordinary differential equations, partial differential
  equations, differential algebraic equations, initial value problems,
  R, FORTRAN, C},
}

@BOOK{Soetaert08,
  title = {A Practical Guide to Ecological Modelling. Using \R as a Simulation Platform},
  publisher = {Springer},
  year = {2009},
  author = {Soetaert, K and Herman, P M J},
  pages = {372},
  note = {ISBN 978-1-4020-8623-6},
}

@Manual{limSolve,
  title = {limSolve: Solving linear inverse models},
  author = {Karline Soetaert and  Van den Meersche, Karel and Dick van Oevelen},
  year = {2008},
  note = {R package version 1.2},
}

@Manual{diagram,
  title = {diagram: Functions for visualising simple graphs (networks), plotting flow diagrams},
  author = {Karline Soetaert},
  year = {2008},
  note = {R package version 1.1},
}

@Manual{ecolMod,
  title = {ecolMod: "A practical guide to ecological modelling - using R as a simulation platform"},
  author = {Karline Soetaert and Peter MJ Herman},
  year = {2008},
  note = {R package version 1.1},
}

@Manual{shape,
  title = {shape: Functions for plotting graphical shapes, colors},
  author = {Karline Soetaert},
  year = {2008},
  note = {R package version 1.1},
}

@Manual{lecture,
  title={using R for scientific computing},
  author={Karline Soetaert},
  year={2008},
  pages={44},
  address = {NIOO-CEME, Yerseke}
}

  @Article{ReacTran_paper,
    title = {Reactive transport in aquatic ecosystems: Rapid model prototyping in the open source software R},
    author = {Karline Soetaert and Filip Meysman},
    journal = {Environmental Modelling and Software},
    year = {2012},
    volume = {32},
    pages = {49--60},
  }

@Manual{ReacTran,
  title = {ReacTran: Reactive transport modelling in 1D, 2D and 3D},
  author = {Karline Soetaert and Filip Meysman},
  year = {2009},
  note = {R package version 1.1},
}

@Manual{ReacTran-vignette,
  title = {ReacTran: R-package ReacTran: Reactive Transport Modelling in R},
  author = {Karline Soetaert and Filip Meysman},
  year = {2010},
  note = {R package vignette},
}