https://github.com/arjunrajlaboratory/RajLabSeqTools
Tip revision: c8b8c79b2ec9c1bd9eb7ced427bb2aec25f19506 authored by Benjamin Emert on 26 March 2020, 17:37:11 UTC
Updated reorganizeBasespaceFiles.py to better parse samples with same first index (e.g. sample 1 and sample10)
Updated reorganizeBasespaceFiles.py to better parse samples with same first index (e.g. sample 1 and sample10)
Tip revision: c8b8c79
units.schema.yaml
$schema: "http://json-schema.org/draft-06/schema#"
description: row of the units.tsv, representing a sequencing unit, i.e. single-end or paired-end data
type: object
properties:
sample:
type: string
description: sample name/id the unit has been sequenced from
unit:
type: string
description: unit id
fq1:
type: string
description: path to FASTQ file
fq2:
type: string
description: path to second FASTQ file (leave empty in case of single-end)
strandedness:
type: string
description: one of the values '0', 'yes' or 'reverse' according to protocol strandedness
required:
- sample
- unit
- fq1
