https://github.com/lotusnprod/lotus-processor
Tip revision: 78e6065d8eb9d0b0d11c2ea8de6ac66b445bca0e authored by Adafede on 26 April 2022, 14:26:24 UTC
update expectations
update expectations
Tip revision: 78e6065
old.adoc
==== Access to metabomaps
You need to have access to the metabomaps server to be able to pull the data, if you don't you will have to pull all the DBs data from scratch.
Add this to your
[source]
----
~/.ssh/config
----
[source]
----
Host metabomaps
IdentityFile /home/<user_local>/.ssh/id_rsa_metabomaps
User <user_remote>
HostName metabomaps.nprod.net
Port 10311
----
==== If you want to build only a simple DB
[source,console]
----
make -C src/1_gathering/db -B alkamid
----
==== Additional bins
There are some additional bins you'll need.
[source,console]
----
make get-bins
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==== Working directory
Your working directory should be 'src'
[source,console]
----
cd src
----
If you are using Visual Studio be sure to set your R and python path in the settings option to reflect your created conda environment.