pom.xml
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<parent>
<groupId>org.sonatype.oss</groupId>
<artifactId>oss-parent</artifactId>
<version>9</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<packaging>pom</packaging>
<version>1.5-SNAPSHOT</version>
<name>HAPI-FHIR</name>
<url>https://github.com/jamesagnew/hapi-fhir</url>
<organization>
<name>University Health Network</name>
<url>http://www.uhn.ca</url>
</organization>
<inceptionYear>2014</inceptionYear>
<issueManagement>
<system>GitHub</system>
<url>https://github.com/jamesagnew/hapi-fhir/issues/</url>
</issueManagement>
<distributionManagement>
<site>
<id>git.server</id>
<url>scm:git:git@github.com:jamesagnew/hapi-fhir.git</url>
</site>
</distributionManagement>
<scm>
<connection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</connection>
<url>scm:git:git@github.com:jamesagnew/hapi-fhir.git</url>
<developerConnection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</developerConnection>
</scm>
<description>
</description>
<dependencies>
<!-- Cobertura is here as a 'provided' depdendency just to get the @CoverageIgnore annotation. It would be nice if there was a better way for this.. -->
<!-- <dependency> <groupId>net.sourceforge.cobertura</groupId> <artifactId>cobertura</artifactId> <version>2.1.1</version> <scope>provided</scope> <exclusions> <exclusion> <artifactId>jetty</artifactId>
<groupId>org.mortbay.jetty</groupId> </exclusion> </exclusions> </dependency> -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>hamcrest-core</artifactId>
<groupId>org.hamcrest</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>java-hamcrest</artifactId>
<version>2.0.0.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>1.10.19</version>
<scope>test</scope>
</dependency>
</dependencies>
<prerequisites>
<maven>3.2</maven>
</prerequisites>
<developers>
<developer>
<id>jamesagnew</id>
<name>James Agnew</name>
<organization>University Health Network</organization>
</developer>
<developer>
<name>Dmitri Sotnikov</name>
<organization>University Health Network</organization>
</developer>
<developer>
<name>Lisa Wong</name>
<organization>University Health Network</organization>
</developer>
<developer>
<name>Josh Mandel</name>
<organization>Boston Children's Hospital</organization>
</developer>
<developer>
<id>lmds</id>
<name>Laura MacDougall Sookraj</name>
<organization>University Health Network</organization>
</developer>
<developer>
<name>Neal Acharya</name>
<organization>University Health Network</organization>
</developer>
<developer>
<name>David Hay</name>
<organization>Orion Health</organization>
</developer>
<developer>
<id>sweetnavelorange</id>
<name>James Butler</name>
<organization>Orion Health</organization>
</developer>
<developer>
<id>suranga</id>
<name>Suranga Nath Kasthurirathne</name>
<organization>OpenMRS / Regenstrief Center for Biomedical Informatics</organization>
</developer>
<developer>
<id>dougmartin</id>
<name>Doug Martin</name>
<organization>Regenstrief Center for Biomedical Informatics</organization>
</developer>
<developer>
<id>akley</id>
<name>Alexander Kley</name>
</developer>
<developer>
<id>preston</id>
<name>Preston Lee</name>
<organization>Arizona State University</organization>
</developer>
<developer>
<id>jjathman</id>
<name>Joe Athman</name>
</developer>
<developer>
<id>petromykhailysyn</id>
<name>Petro Mykhailyshyn</name>
</developer>
<developer>
<id>tahurac</id>
<name>Tahura Chaudhry</name>
<organization>University Health Network</organization>
</developer>
<developer>
<id>b.debeaubien</id>
<name>Bill de Beaubien</name>
<organization>Systems Made Simple</organization>
</developer>
<developer>
<id>twilson650</id>
<name>Tom Wilson</name>
</developer>
<developer>
<id>esteban-aliverti</id>
<name>Esteban Aliverti</name>
</developer>
<developer>
<id>mochaholic</id>
<name>Mohammad Jafari</name>
<organization>Edmond Scientific Company</organization>
</developer>
<developer>
<id>joel-costigliola</id>
<name>Joel Costigliola</name>
<organization>JCOS-Technologies</organization>
</developer>
<developer>
<id>pukkaone</id>
<name>Chin Huang</name>
</developer>
<developer>
<id>SingingTree</id>
<name>Bryce Van Dyk</name>
</developer>
<developer>
<id>botunge</id>
<name>Thomas Andersen</name>
</developer>
<developer>
<id>samlanfranchi</id>
<name>Sam Lanfranchi</name>
</developer>
<developer>
<id>jkiddo</id>
<name>Jens Kristian Villadsen</name>
</developer>
<developer>
<id>cmikeb1</id>
<name>C. Mike Bylund</name>
</developer>
<developer>
<id>nrpeterson</id>
<name>Nick Peterson</name>
</developer>
<developer>
<id>petervanhoute</id>
<name>Peter Van Houte</name>
</developer>
<developer>
<id>karlmdavis</id>
<name>Karl M. Davis</name>
</developer>
<developer>
<id>matt-blanchette</id>
<name>Matt Blanchette</name>
</developer>
<developer>
<id>petromykhailysyn</id>
<name>Petro Mykhaylyshyn</name>
</developer>
<developer>
<id>adam-carbone</id>
<name>Adam Carbone</name>
</developer>
<developer>
<id>joelsch</id>
<name>joelsch</name>
</developer>
</developers>
<licenses>
<license>
<name>Apache Software License 2.0</name>
<url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<properties>
<!-- configure timestamp in MANIFEST.MF for maven-war-provider -->
<maven.build.timestamp.format>yyyy-MM-dd'T'HH:mm:ss'Z'</maven.build.timestamp.format>
<!-- This property is used in some of the site documentation where the version is shown, so that we can deploy the site even if the project is on a snapshot version. -->
<hapi_stable_version>1.4</hapi_stable_version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<!-- For site-deploy -->
<siteMainDirectory>${user.home}/sites/hapi-fhir</siteMainDirectory>
<scmPubCheckoutDirectory>${user.home}/sites/scm/hapi-fhir</scmPubCheckoutDirectory>
<!-- Dependency Versions -->
<derby_version>10.12.1.1</derby_version>
<jersey_version>2.22.2</jersey_version>
<jetty_version>9.3.7.v20160115 </jetty_version>
<!-- Note on Hibernate versions: Hibernate 4.3+ uses JPA 2.1, which is too new for a number of platforms including JBoss EAP 6.x and Glassfish 3.0. Upgrade this version with caution! Also note that if
you change this, you may get a failure in hibernate4-maven-plugin. See the note in hapi-fhir-jpaserver-base/pom.xml's configuration for that plugin... -->
<hibernate_version>5.1.0.Final</hibernate_version>
<hibernate_validator_version>5.2.4.Final</hibernate_validator_version>
<maven_assembly_plugin_version>2.5.3</maven_assembly_plugin_version>
<maven_license_plugin_version>1.8</maven_license_plugin_version>
<maven_source_plugin_version>2.4</maven_source_plugin_version>
<mitreid-connect-version>1.1.8</mitreid-connect-version>
<phloc_schematron_version>2.7.1</phloc_schematron_version>
<phloc_commons_version>4.4.4</phloc_commons_version>
<spring_version>4.2.5.RELEASE</spring_version>
<thymeleaf-version>2.1.4.RELEASE</thymeleaf-version>
<ebay_cors_filter_version>1.0.1</ebay_cors_filter_version>
<xmlunit_version>1.6</xmlunit_version>
<!-- We are aiming to still work on a very old version of SLF4j even though we depend on the newest, just to be nice to users of the API. This version is tested in the hapi-fhir-cobertura. -->
<slf4j_target_version>1.6.0</slf4j_target_version>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
</properties>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>aopalliance</groupId>
<artifactId>aopalliance</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.1.5</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>19.0</version>
</dependency>
<dependency>
<groupId>com.phloc</groupId>
<artifactId>phloc-schematron</artifactId>
<version>${phloc_schematron_version}</version>
</dependency>
<dependency>
<groupId>com.phloc</groupId>
<artifactId>phloc-commons</artifactId>
<version>${phloc_commons_version}</version>
</dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>1.3.1</version>
</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.10</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.4</version>
</dependency>
<dependency>
<groupId>javax.ejb</groupId>
<artifactId>ejb-api</artifactId>
<version>3.0</version>
</dependency>
<dependency>
<groupId>javax.el</groupId>
<artifactId>javax.el-api</artifactId>
<version>3.0.0</version>
</dependency>
<dependency>
<groupId>javax.json</groupId>
<artifactId>javax.json-api</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>javax.mail</groupId>
<artifactId>javax.mail-api</artifactId>
<version>1.5.5</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.1.0</version>
</dependency>
<dependency>
<groupId>javax.transaction</groupId>
<artifactId>javax.transaction-api</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>javax.validation</groupId>
<artifactId>validation-api</artifactId>
<version>1.1.0.Final</version>
</dependency>
<dependency>
<groupId>javax.ws.rs</groupId>
<artifactId>javax.ws.rs-api</artifactId>
<version>2.0.1</version>
</dependency>
<dependency>
<groupId>lt.velykis.maven.skins</groupId>
<artifactId>reflow-velocity-tools</artifactId>
<version>1.1.1</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-dbcp2</artifactId>
<version>2.1.1</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.4</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derby</artifactId>
<version>${derby_version}</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbynet</artifactId>
<version>${derby_version}</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbyclient</artifactId>
<version>${derby_version}</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.5.1</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient-android</artifactId>
<version>4.3.5.1</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpcore</artifactId>
<version>4.4.4</version>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-highlighter</artifactId>
<version>5.3.1</version>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers-phonetic</artifactId>
<version>5.3.1</version>
</dependency>
<dependency>
<groupId>org.apache.maven.doxia</groupId>
<artifactId>doxia-module-markdown</artifactId>
<version>1.6</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-api</artifactId>
<version>1.9.4</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-manager-plexus</artifactId>
<version>1.9.4</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-provider-gitexe</artifactId>
<version>1.9.4</version>
</dependency>
<dependency>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-scm</artifactId>
<version>2.10</version>
</dependency>
<dependency>
<groupId>org.apache.velocity</groupId>
<artifactId>velocity</artifactId>
<version>1.7</version>
</dependency>
<dependency>
<groupId>org.apache.velocity</groupId>
<artifactId>velocity-tools</artifactId>
<version>2.0</version>
</dependency>
<dependency>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>woodstox-core-asl</artifactId>
<version>4.4.1</version>
</dependency>
<dependency>
<groupId>org.ebaysf.web</groupId>
<artifactId>cors-filter</artifactId>
<version>${ebay_cors_filter_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-http</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-api</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-client</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.websocket</groupId>
<artifactId>websocket-server</artifactId>
<version>${jetty_version}</version>
</dependency>
<dependency>
<groupId>org.fusesource.jansi</groupId>
<artifactId>jansi</artifactId>
<version>1.11</version>
</dependency>
<dependency>
<groupId>org.glassfish</groupId>
<artifactId>javax.el</artifactId>
<version>3.0.0</version>
</dependency>
<dependency>
<groupId>org.glassfish</groupId>
<artifactId>javax.json</artifactId>
<version>1.0.4</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-server</artifactId>
<version>${jersey_version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-servlet-core</artifactId>
<version>${jersey_version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-jetty-http</artifactId>
<version>${jersey_version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-moxy</artifactId>
<version>${jersey_version}</version>
</dependency>
<dependency>
<groupId>org.jscience</groupId>
<artifactId>jscience</artifactId>
<version>4.3.1</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>${hibernate_version}</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-ehcache</artifactId>
<version>${hibernate_version}</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>${hibernate_version}</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>${hibernate_validator_version}</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-search-orm</artifactId>
<version>5.5.2.Final</version>
</dependency>
<dependency>
<groupId>org.javassist</groupId>
<artifactId>javassist</artifactId>
<version>3.20.0-GA</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-android</artifactId>
<version>1.7.16</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.16</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>1.7.16</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<version>1.9.2.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-messaging</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-websocket</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>${thymeleaf-version}</version>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf-spring4</artifactId>
<version>${thymeleaf-version}</version>
</dependency>
<dependency>
<groupId>xmlunit</groupId>
<artifactId>xmlunit</artifactId>
<version>1.6</version>
</dependency>
</dependencies>
</dependencyManagement>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>de.juplo</groupId>
<artifactId>hibernate4-maven-plugin</artifactId>
<version>1.1.0</version>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.0.1</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<version>1.8</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.5.1</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
<compilerId>javac-with-errorprone</compilerId>
<forceJavacCompilerUse>true</forceJavacCompilerUse>
<encoding>UTF-8</encoding>
</configuration>
<dependencies>
<dependency>
<groupId>com.google.errorprone</groupId>
<artifactId>error_prone_core</artifactId>
<version>2.0.8</version>
</dependency>
<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-compiler-javac</artifactId>
<version>2.7</version>
</dependency>
<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-compiler-javac-errorprone</artifactId>
<version>2.7</version>
</dependency>
<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-utils</artifactId>
<version>3.0.22</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>2.10</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.8.2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.3</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
<version>2.5</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<version>2.19.1</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.3</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.0.0</version>
<dependencies>
<dependency>
<groupId>org.codehaus.plexus</groupId>
<artifactId>plexus-utils</artifactId>
<version>3.0.22</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.19.1</version>
<configuration>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<runOrder>random</runOrder>
<argLine>-Dfile.encoding=UTF-8 -Xmx712m</argLine>
<forkCount>1</forkCount>
<!--<reuseForks>false</reuseForks> -->
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.6</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>1.10</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>animal-sniffer-maven-plugin</artifactId>
<version>1.14</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>cobertura-maven-plugin</artifactId>
<version>2.7</version>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>license-maven-plugin</artifactId>
<version>1.8</version>
<configuration>
<verbose>true</verbose>
<addSvnKeyWords>false</addSvnKeyWords>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>versions-maven-plugin</artifactId>
<version>2.2</version>
</plugin>
<plugin>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<version>${jetty_version}</version>
</plugin>
<plugin>
<groupId>org.eluder.coveralls</groupId>
<artifactId>coveralls-maven-plugin</artifactId>
<version>4.1.0</version>
<configuration>
<coberturaReports>
</coberturaReports>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<!--
Be careful upgrading the version of this plugin- 3.5 breaks the
relow-maven-skin that we use currently. Also once we move to 3.5
the site.xml <head> tag needs to have its contents put in a
CDATA block. What an unpleasant misadventure to figure that all
out......
-->
<version>3.4</version>
<configuration>
<skip>false</skip>
<skipDeploy>true</skipDeploy>
<inputEncoding>UTF-8</inputEncoding>
<outputEncoding>UTF-8</outputEncoding>
</configuration>
<dependencies>
<dependency>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-scm</artifactId>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-manager-plexus</artifactId>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-provider-gitexe</artifactId>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-api</artifactId>
</dependency>
<!--
<dependency>
<groupId>org.apache.maven.doxia</groupId>
<artifactId>doxia-core</artifactId>
</dependency>
-->
<dependency>
<groupId>org.apache.maven.doxia</groupId>
<artifactId>doxia-module-markdown</artifactId>
</dependency>
<dependency>
<groupId>lt.velykis.maven.skins</groupId>
<artifactId>reflow-velocity-tools</artifactId>
</dependency>
<dependency>
<groupId>org.apache.velocity</groupId>
<artifactId>velocity</artifactId>
</dependency>
</dependencies>
</plugin>
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
ca.uhn.hapi.fhir
</groupId>
<artifactId>
hapi-tinder-plugin
</artifactId>
<versionRange>
[0.8-SNAPSHOT,)
</versionRange>
<goals>
<goal>
generate-jparest-server
</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-antrun-plugin
</artifactId>
<versionRange>
[1.7,)
</versionRange>
<goals>
<goal>run</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.codehaus.mojo
</groupId>
<artifactId>
build-helper-maven-plugin
</artifactId>
<versionRange>
[1.9.1,)
</versionRange>
<goals>
<goal>add-source</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-compiler-plugin
</artifactId>
<versionRange>
[3.3,)
</versionRange>
<goals>
<goal>compile</goal>
<goal>testCompile</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<version>2.17</version>
<dependencies>
<dependency>
<groupId>com.puppycrawl.tools</groupId>
<artifactId>checkstyle</artifactId>
<version>6.15</version>
</dependency>
</dependencies>
<configuration>
<configLocation>${project.basedir}/src/checkstyle/checkstyle.xml</configLocation>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-install-plugin</artifactId>
<version>2.5.2</version>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<executions>
<execution>
<id>enforce-java</id>
<goals>
<goal>enforce</goal>
</goals>
<configuration>
<rules>
<requireJavaVersion>
<version>[1.8,)</version>
<message>
The hapi-fhir Maven build requires JDK version 1.8 or higher.
</message>
</requireJavaVersion>
</rules>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>license-maven-plugin</artifactId>
<inherited>false</inherited>
<executions>
<execution>
<id>update-project-license</id>
<phase>package</phase>
<goals>
<goal>update-project-license</goal>
</goals>
<configuration>
<licenseName>apache_v2</licenseName>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
<inherited>false</inherited>
<executions>
<execution>
<id>copySubProjects</id>
<phase>site</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<copy todir="target/site/apidocs">
<fileset dir="hapi-fhir-base/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-dstu">
<fileset dir="hapi-fhir-structures-dstu/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-dstu2">
<fileset dir="hapi-fhir-structures-dstu2/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-dstu3">
<fileset dir="hapi-fhir-structures-dstu3/target/site/apidocs"/>
</copy>
<copy todir="target/site/apidocs-jpaserver">
<fileset dir="hapi-fhir-jpaserver-base/target/site/apidocs"/>
</copy>
<copy todir="target/site/xref-jpaserver">
<fileset dir="hapi-fhir-jpaserver-base/target/site/xref"/>
</copy>
<copy todir="target/site/xref-base">
<fileset dir="hapi-fhir-base/target/site/xref"/>
</copy>
<!-- <copy todir="target/site/cobertura"> <fileset dir="hapi-fhir-cobertura/target/site/cobertura" /> </copy> -->
<copy todir="target/site">
<fileset dir="hapi-fhir-base/target/site" includes="checkstyle.*"/>
</copy>
<echo>Fixing Checkstyle Report</echo>
<replace dir="target/site" summary="true">
<include name="checkstyle.html"/>
<replacetoken>"../../</replacetoken>
<replacevalue>"./</replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken>http://netdna.bootstrapcdn.com/twitter-bootstrap/2.3.1/css/bootstrap-responsive.min.css</replacetoken>
<replacevalue>./css/bootstrap-responsive.min.css</replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="index.html"/>
<replacetoken><![CDATA[<h2 id="Welcome">Welcome</h2>]]></replacetoken>
<replacevalue><![CDATA[<div class="jumbotron subhead">
<div class="row" id="banner">
<div class="span12">
<div class="pull-left">
<a href="./" id="bannerLeft"><img src="images/hapi_fhir_banner.png" alt='"'HAPI'"' /></a>
</div>
<div class="pull-right">
<a href="./" id="bannerRight"><img src="images/hapi_fhir_banner_right.png" alt='"'FHIR'"' /></a>
</div>
</div>
</div>
</div>]]></replacevalue>
</replace>
<!--<replaceregexp file="target/site/checkstyle.html" byline="false" match="<ul class="breadcrumb.*?</ul>" replace="" flags="s"/> -->
</target>
</configuration>
</execution>
<execution>
<id>addSyntaxHighlighter</id>
<phase>site</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<echo>Adding Fontawesome</echo>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken><![CDATA[<a href="download.html" title="Download">Download</a>]]></replacetoken>
<replacevalue><![CDATA[<a href="download.html" title="Download"><i class="fa fa-download"></i> Download</a>]]></replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken><![CDATA[<a href="https://github.com/jamesagnew/hapi-fhir/" title="GitHub Project" class="externalLink">GitHub Project</a>]]></replacetoken>
<replacevalue><![CDATA[<a href="https://github.com/jamesagnew/hapi-fhir/" title="GitHub Project" class="externalLink"><i class="fa fa-github"></i> GitHub Project</a>]]></replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken><![CDATA[data-toggle="dropdown">Test Servers <]]></replacetoken>
<replacevalue><![CDATA[data-toggle="dropdown"><i class="fa fa-fire"></i> Test Servers <]]></replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken><![CDATA[data-toggle="dropdown">Documentation <]]></replacetoken>
<replacevalue><![CDATA[data-toggle="dropdown"><i class="fa fa-book"></i> Documentation <]]></replacevalue>
</replace>
<replace dir="target/site" summary="true">
<include name="*.html"/>
<replacetoken><![CDATA[data-toggle="dropdown">Get Help <]]></replacetoken>
<replacevalue><![CDATA[data-toggle="dropdown"><i class="fa fa-support"></i> Get Help <]]></replacevalue>
</replace>
<echo>Changing Breadcrumbs</echo>
<replace dir="target/site" summary="true">
<include name="doc_*.html"/>
<replacetoken><![CDATA[<li class="divider">/</li>]]></replacetoken>
<replacevalue><![CDATA[<li class="divider">/</li>
<li><a href="docindex.html" title="Documentation">Documentation</a></li>
<li class="divider">/</li>]]></replacevalue>
</replace>
<echo>Adding Syntax Highlighter</echo>
<replace dir="target/site" summary="true">
<include name="*.html"></include>
<replacetoken><![CDATA[</body>]]></replacetoken>
<replacevalue><![CDATA[
<script type="text/javascript">
var elements = document.getElementsByClassName("source");
for (var i=0; i < elements.length; i++) {
var pres = elements[i].getElementsByTagName("pre");
for (var j = 0; j < pres.length; j++) {
var pre = pres[j];
if (pre.innerHTML.match(/^\s*\<\;/)) {
pre.className = 'brush: xml';
} else if (pre.innerHTML.match(/\/\*/)) {
pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\/\//)) {
pre.className = 'brush: java';
} else if (pre.innerHTML.match(/^\{/)) {
pre.className = 'brush: jscript';
} else if (pre.innerHTML.match(/^\#/)) {
pre.className = 'brush: bash';
} else if (pre.innerHTML.match(/\<\;\//)) {
pre.className = 'brush: xml';
} else {
pre.className = 'brush: java';
}
}
}
SyntaxHighlighter.all();
</script>
</body>
]]></replacevalue>
</replace>
</target>
</configuration>
</execution>
<execution>
<id>addAnalytics</id>
<phase>site</phase>
<configuration>
<target>
<echo>Adding Google analytics in target/site for <body></echo>
<replace dir="target/site" summary="true">
<include name="**/*.html"></include>
<replacefilter token="#build#" value="${label}"/>
<replacefilter token="#version#" value="${project.version}"/>
<replacetoken><![CDATA[</body>]]></replacetoken>
<replacevalue><![CDATA[
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</body >
]]></replacevalue>
</replace>
<echo>Adding Google analytics in target/site for <BODY></echo>
<replace dir="target/site" summary="true">
<include name="**/*.html"></include>
<replacetoken><![CDATA[</BODY>]]></replacetoken>
<replacevalue><![CDATA[
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-5', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</BODY >
]]></replacevalue>
</replace>
</target>
</configuration>
<goals>
<goal>run</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>animal-sniffer-maven-plugin</artifactId>
<inherited>true</inherited>
<configuration>
<signature>
<groupId>org.codehaus.mojo.signature</groupId>
<artifactId>java16</artifactId>
<version>1.1</version>
</signature>
</configuration>
</plugin>
<plugin>
<artifactId>maven-site-plugin</artifactId>
<inherited>false</inherited>
<executions>
<execution>
<id>stage-for-scm-publish</id>
<phase>post-site</phase>
<goals>
<goal>stage</goal>
</goals>
<configuration>
<stagingDirectory>${siteMainDirectory}</stagingDirectory>
</configuration>
</execution>
</executions>
<dependencies>
<dependency>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-scm</artifactId>
<version>2.10</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-manager-plexus</artifactId>
<version>1.9.4</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-provider-gitexe</artifactId>
<version>1.9.4</version>
</dependency>
<dependency>
<groupId>org.apache.maven.scm</groupId>
<artifactId>maven-scm-api</artifactId>
<version>1.9.4</version>
</dependency>
<!--
<dependency>
<groupId>org.apache.maven.doxia</groupId>
<artifactId>doxia-core</artifactId>
<version>1.7</version>
</dependency>
-->
<dependency>
<groupId>org.apache.maven.doxia</groupId>
<artifactId>doxia-module-markdown</artifactId>
<version>1.6</version>
</dependency>
<dependency>
<groupId>lt.velykis.maven.skins</groupId>
<artifactId>reflow-velocity-tools</artifactId>
<version>1.1.1</version>
</dependency>
<dependency>
<groupId>org.apache.velocity</groupId>
<artifactId>velocity</artifactId>
<version>1.7</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-scm-publish-plugin</artifactId>
<version>1.1</version>
<inherited>false</inherited>
<configuration>
<checkoutDirectory>${scmPubCheckoutDirectory}</checkoutDirectory>
<content>\${siteMainDirectory}</content>
<tryUpdate>true</tryUpdate>
<scmBranch>gh-pages</scmBranch>
<pubScmUrl>scm:git:git@github.com:jamesagnew/hapi-fhir.git</pubScmUrl>
</configuration>
<executions>
<execution>
<id>scm-publish</id>
<phase>site-deploy</phase>
<goals>
<goal>publish-scm</goal>
</goals>
</execution>
</executions>
</plugin>
<!--
<plugin>
<groupId>com.github.github</groupId>
<artifactId>site-maven-plugin</artifactId>
<version>0.12</version>
<configuration>
<message>Building site for ${project.version}</message>
<server>github</server>
</configuration>
<executions>
<execution>
<goals>
<goal>site</goal>
</goals>
<phase>site-deploy</phase>
</execution>
</executions>
</plugin>
-->
</plugins>
</build>
<reporting>
<plugins>
<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-checkstyle-plugin</artifactId> <reportSets> <reportSet> <reports><report>checkstyle-aggregate</report></reports> </reportSet>
</reportSets> <configuration> <configLocation>config/sun_checks.xml</configLocation> <includes> hapi-fhir-base/src/main/java/**/*.java </includes> </configuration> </plugin> -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-changes-plugin</artifactId>
<version>2.11</version>
<inherited>false</inherited>
<reportSets>
<reportSet>
<reports>
<report>changes-report</report>
</reports>
</reportSet>
</reportSets>
<configuration>
<feedType>atom_1.0</feedType>
<issueLinkTemplatePerSystem>
<default>https://github.com/jamesagnew/hapi-fhir/issues/%ISSUE%</default>
</issueLinkTemplatePerSystem>
<escapeHTML>false</escapeHTML>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-report-plugin</artifactId>
<version>2.19.1</version>
<reportSets>
<reportSet>
<reports>
<report>failsafe-report-only</report>
</reports>
</reportSet>
</reportSets>
<configuration>
<reportsDirectories>
<reportDirectory>${project.basedir}/hapi-fhir-base/target/surefire-reports/</reportDirectory>
<reportDirectory>${project.basedir}/hapi-fhir-structures-dstu/target/surefire-reports/</reportDirectory>
<reportDirectory>${project.basedir}/hapi-fhir-structures-dstu2/target/surefire-reports/</reportDirectory>
<reportDirectory>${project.basedir}/hapi-fhir-jpaserver-base/target/surefire-reports/</reportDirectory>
</reportsDirectories>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-project-info-reports-plugin</artifactId>
<version>2.8.1</version>
<inherited>false</inherited>
<reportSets>
<reportSet>
<reports>
<report>project-team</report>
<report>issue-tracking</report>
<report>license</report>
<report>scm</report>
</reports>
</reportSet>
</reportSets>
</plugin>
<!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-linkcheck-plugin</artifactId> <version>1.1</version> </plugin> -->
</plugins>
</reporting>
<profiles>
<profile>
<id>DIST</id>
<modules>
<module>hapi-fhir-osgi-core</module>
</modules>
</profile>
<profile>
<id>ROOT</id>
<reporting>
<plugins>
</plugins>
</reporting>
<modules>
</modules>
<build>
<plugins>
<!-- <plugin> <artifactId>maven-assembly-plugin</artifactId> <version>${maven_assembly_plugin_version}</version> <executions> <execution> <phase>package</phase> <goals> <goal>single</goal> </goals>
<configuration> <attach>false</attach> <descriptors> <descriptor>${project.basedir}/src/assembly/hapi-fhir-sample-projects.xml</descriptor> </descriptors> </configuration> </execution> </executions> </plugin> -->
</plugins>
</build>
</profile>
<profile>
<id>SIGN_ARTIFACTS</id>
<activation>
<property>
<name>gpg.passphrase</name>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>SITE</id>
<modules>
<module>hapi-fhir-base</module>
<module>hapi-fhir-structures-dstu</module>
<module>hapi-fhir-structures-dstu2</module>
<module>hapi-fhir-structures-dstu3</module>
<module>hapi-fhir-jpaserver-base</module>
<module>hapi-fhir-jaxrsserver-base</module>
<!-- <module>hapi-fhir-cobertura</module> -->
<module>examples</module>
</modules>
<reporting>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.3</version>
<configuration>
<classFilesDirectory>./hapi-fhir-base/target/classes</classFilesDirectory>
</configuration>
<reportSets>
<reportSet>
<reports>
<report>findbugs</report>
</reports>
</reportSet>
</reportSets>
</plugin>
</plugins>
</reporting>
</profile>
<profile>
<id>ALLMODULES</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<modules>
<module>hapi-deployable-pom</module>
<module>hapi-fhir-base</module>
<!--<module>hapi-fhir-oauth2</module> -->
<module>hapi-fhir-base-test-mindeps-client</module>
<module>hapi-fhir-base-test-mindeps-server</module>
<module>hapi-tinder-plugin</module>
<module>hapi-tinder-test</module>
<module>hapi-fhir-structures-dstu</module>
<module>hapi-fhir-validation-resources-dstu2</module>
<module>hapi-fhir-structures-dstu2</module>
<module>hapi-fhir-structures-hl7org-dstu2</module>
<module>hapi-fhir-validation-resources-dstu3</module>
<module>hapi-fhir-structures-dstu3</module>
<module>hapi-fhir-jaxrsserver-base</module>
<module>hapi-fhir-jaxrsserver-example</module>
<module>hapi-fhir-jpaserver-base</module>
<module>hapi-fhir-jpaserver-example</module>
<module>restful-server-example</module>
<module>restful-server-example-test</module>
<module>hapi-fhir-testpage-overlay</module>
<module>hapi-fhir-jpaserver-uhnfhirtest</module>
<module>hapi-fhir-android</module>
<module>hapi-fhir-cli</module>
<module>hapi-fhir-dist</module>
<module>examples</module>
<module>hapi-fhir-base-example-embedded-ws</module>
</modules>
</profile>
<profile>
<id>COBERTURA</id>
<modules>
<module>hapi-fhir-cobertura</module>
</modules>
</profile>
</profiles>
<modules>
</modules>
</project>