"latex.table.rq" <- function (object, transpose = FALSE, caption = "caption goes here.", digits = 3, file = as.character(substitute(object)), ...) { a <- format(round(object$a, digits)) taus <- format(round(object$taus, digits)) tdim <- dim(a) p <- tdim[1] k <- tdim[2] m <- tdim[3] table <- matrix("", p, m) for (i in 1:m) { for (j in 1:p) { if (k == 3) { table[j, i] <- paste("$\\underset{(", a[j, 2, i], ",", a[j, 3, i], ")}{", a[j, 1, i], "}$",sep="") } else if (k == 4) { table[j, i] <- paste("$\\underset{(", a[j,2,i] , ")}{", a[j,1, i], "}$",sep="") } } } rlab <- dimnames(a)[[1]] clab <- taus rowlabel <- "Covariates" dimnames(table) <- list(rlab, clab) if(transpose) { table=t(table) rowlabel <- "Quantiles" } latex.table(table, caption = caption, rowlabel = rowlabel, file = file) invisible() } "plot.table.rq" <- function (x, nrow = 3, ncol = 2, alpha= .1, ...) { #x is an object of class table.rq created by table.rq() tdim <- dim(x$a) p <- tdim[1] k <- tdim[2] m <- tdim[3] par(mfrow = c(nrow, ncol)) ylab <- dimnames(x$a)[[1]] xx <- x$taus zalpha <- qnorm(1-alpha/2) for (i in 1:p) { if(x$method == "fn"){ b <- x$a[i,1,] bl <- x$a[i,1,] - x$a[i,2,]*zalpha bu <- x$a[i,1,] + x$a[i,2,]*zalpha } else { b <- x$a[i,1,] bl <- x$a[i,2,] bu <- x$a[i,3,] } plot(rep(xx, 2), c(bl,bu), xlab = "tau", ylab = ylab[i], type = "n") polygon(c(xx,rev(xx)),c(bl,rev(bu)),col="grey") points(xx, b, pch = "o") lines(xx, b) #lines(xx, bl, lty = 2) #lines(xx, bu, lty = 2) } } "latex.table" <- function (x, file = as.character(substitute(x)), rowlabel = file, rowlabel.just = "l", cgroup, n.cgroup, rgroup, n.rgroup = NULL, digits, dec, rdec, cdec, append = FALSE, dcolumn = FALSE, cdot = FALSE, longtable = FALSE, table.env = TRUE, lines.page = 40, caption, caption.lot, label = file, double.slash = FALSE, ...) { nc <- ncol(x) nr <- nrow(x) if (missing(caption) & !missing(caption.lot)) warning("caption.lot is ignored unless caption is specified") if (!longtable & !table.env & !missing(caption)) stop("you must have table.env=TRUE if caption is given") if (!missing(digits)) .Options$digits <- digits sl <- if (double.slash) "\\\\" else "\\" rlj <- if (rowlabel.just == "l") "l" else "c" if (!missing(dec)) { if (length(dec) == 1) x <- round(x, dec) else { if (!is.matrix(dec) || nrow(dec) != nrow(x) || ncol(dec) != ncol(x)) stop("dimensions of dec do not match those of x") for (i in 1:nr) for (j in 1:nc) x[i, j] <- round(x[i, j], dec[i, j]) } cx <- format(x) } else if (!missing(rdec)) { cx <- NULL for (i in 1:nr) { x[i, ] <- round(x[i, ], rdec[i]) cx <- rbind(cx, format(x[i, ])) } } else if (!missing(cdec)) { cx <- NULL for (j in 1:nc) { x[, j] <- round(x[, j], cdec[j]) cx <- cbind(cx, format(x[, j])) } } else cx <- format(x) cx[is.na(x)] <- "" if (dcolumn) sep <- "." else { #cx <- translate(cx, " ", "~") cx <- matrix(chartr(" ", "~", cx), nrow=nr) if (cdot) { #cx <- translate(cx, "[.]", "\\\\cdot", multichar = TRUE) cx <- gsub("[.]", "\\\\cdot", cx) cx <- matrix(paste("$", cx, "$", sep = ""), nrow = nr) cx[is.na(x)] <- "" } sep <- "c" } if (is.null(n.rgroup) && !missing(rgroup)) n.rgroup <- rep(nr/length(rgroup), length(rgroup)) if (!is.null(n.rgroup) && sum(n.rgroup) != nr) stop("sum of n.rgroup must equal number of rows in x") if (!missing(rgroup) && !is.null(n.rgroup) && (length(rgroup) != length(n.rgroup))) stop("lengths of rgroup and n.rgroup must match") fi <- paste(file, ".tex", sep = "") rowname <- dimnames(x)[[1]] if (length(rowname) == 0) { rowname <- NULL rowlabel <- NULL if (!missing(rgroup)) stop("you must have row dimnames to use rgroup") } #start new file if (!append) cat("", file = fi) cat("%", deparse(match.call()), "\n%\n", file = fi, append = TRUE) if (dcolumn) cat(sl, "newcolumn{.}{D{.}{", sl, "cdot}{-1}}\n", file = fi, append = TRUE) if (!is.null(rowlabel)) form <- paste("|", rowlabel.just, "|", sep = "") else form <- "" f <- paste("|", sep, sep = "", collapse = "") if (missing(cgroup)) ff <- c(rep(f, nc), "|") else { k <- length(cgroup) if (missing(n.cgroup)) n.cgroup <- rep(nc/k, k) if (sum(n.cgroup) != nc) stop("sum of n.cgroup must equal number of columns") if (length(n.cgroup) != length(cgroup)) stop("cgroup and n.cgroup must have same lengths") ff <- NULL for (i in 1:k) ff <- c(ff, rep(f, n.cgroup[i]), "|") } form <- paste(form, paste(ff, collapse = ""), sep = "") #if(missing(cgroup)) hline <- "" else hline <- paste(sl,"hline",sep="") hline <- "" if (!missing(caption)) caption <- paste(sl, "caption", if (missing(caption.lot)) NULL else paste("[", caption.lot, "]", sep = ""), "{", caption, if (longtable) NULL else paste(sl, "label{", label, "}", sep = ""), "}", sep = "") if (!longtable) { if (table.env) cat(sl, "begin{table}[hptb]\n", sep = "", file = fi, append = TRUE) cat(sl, "begin{center}\n", file = fi, sep = "", append = TRUE) cat(sl, "begin{tabular}{", form, "} ", sl, "hline", hline, "\n", sep = "", file = fi, append = TRUE) } else { cat(paste(sl, "setlongtables", sep = ""), paste(sl, "begin{longtable}{", form, "}", sep = ""), sep = "\n", file = fi, append = TRUE) if (!missing(caption)) cat(caption, sl, sl, "\n", sep = "", file = fi, append = TRUE) cat(sl, "hline", hline, "\n", sep = "", file = fi, append = TRUE) } if (!missing(cgroup)) { cgroup <- paste(sl, "bf ", cgroup, sep = "") if (is.null(rowlabel)) { labs <- c(paste(sl, "multicolumn{", n.cgroup[1], "}{|c||}{", cgroup[1], "}", sep = "", collapse = ""), if (k > 2) paste(sl, "multicolumn{", n.cgroup[c(-1, -k)], "}{c||}{", cgroup[c(-1, -k)], "}", sep = "") else NULL, paste(sl, "multicolumn{", n.cgroup[k], "}{c|}{", cgroup[k], "}", sep = "")) g <- paste(sl, "hline", sep = "") } else { rowlabel <- paste(sl, "bf ", rowlabel, sep = "") labs <- c(paste(sl, "multicolumn{1}{|", rlj, "||}{", rowlabel, "}", sep = ""), paste(sl, "multicolumn{", n.cgroup[-k], "}{c||}{", cgroup[-k], "}", sep = ""), paste(sl, "multicolumn{", n.cgroup[k], "}{c|}{", cgroup[k], "}", sep = "")) g <- paste(sl, "cline{2-", nc + 1, "}", sep = "") } cat(labs, file = fi, sep = "&", append = TRUE) cat(sl, sl, " ", g, "\n", sep = "", file = fi, append = TRUE) if (!is.null(rowlabel)) rowlabel <- "" } collabel <- dimnames(x)[[2]] if (is.null(collabel)) collabel <- as.character(1:nc) labs <- c(rowlabel, collabel) if (missing(cgroup)) { if (is.null(rowlabel)) pre <- c(paste(sl, "multicolumn{1}{|c|}{", sep = ""), rep(paste(sl, "multicolumn{1}{c|}{", sep = ""), nc - 1)) else pre <- c(paste(sl, "multicolumn{1}{|", rlj, "||}{", sep = ""), rep(paste(sl, "multicolumn{1}{c|}{", sep = ""), nc)) } else { if (is.null(rowlabel)) { pre <- NULL j <- 0 for (i in 1:k) { if (n.cgroup[i] > 1) { g <- rep(paste(sl, "multicolumn{1}{c|}{", sep = ""), n.cgroup[i] - 1) if (j == 0) g[1] <- paste(sl, "multicolumn{1}{|c|}{", sep = "") pre <- c(pre, g) } j <- j + n.cgroup[i] if (j == 1) g <- paste(sl, "multicolumn{1}{|c||}{", sep = "") else if (j < nc) g <- paste(sl, "multicolumn{1}{c||}{", sep = "") else g <- paste(sl, "multicolumn{1}{c|}{", sep = "") pre <- c(pre, g) } } else { pre <- paste(sl, "multicolumn{1}{|", rlj, "||}{", sep = "") j <- 0 for (i in 1:k) { pre <- c(pre, rep(paste(sl, "multicolumn{1}{c|}{", sep = ""), n.cgroup[i] - 1)) j <- j + n.cgroup[i] if (j < nc) g <- paste(sl, "multicolumn{1}{c||}{", sep = "") else g <- paste(sl, "multicolumn{1}{c|}{", sep = "") pre <- c(pre, g) } } } labs <- paste(pre, labs, "}", sep = "") cat(labs, file = fi, sep = "&", append = TRUE) cat(sl, sl, " ", sl, "hline", hline, "\n", sep = "", file = fi, append = TRUE) if (longtable) { if (missing(caption)) cat(sl, "endhead\n", sl, "hline", sl, "endfoot\n", sep = "", file = fi, append = TRUE) else { cat(sl, "endfirsthead\n", sep = "", file = fi, append = TRUE) if (!missing(caption)) cat(sl, "caption[]{\\em (continued)} ", sl, sl, "\n", sep = "", file = fi, append = TRUE) cat(sl, "hline", hline, "\n", sep = "", file = fi, append = TRUE) cat(labs, file = fi, sep = "&", append = TRUE) cat(sl, sl, " ", sl, "hline", hline, "\n", sl, "endhead", sl, "hline", sl, "endfoot\n", sep = "", file = fi, append = TRUE) cat(sl, "label{", label, "}\n", sep = "", file = fi, append = TRUE) } } if (is.null(n.rgroup)) rg.end <- 0 else { rg.end <- cumsum(n.rgroup) rg.start <- rg.end - n.rgroup + 1 if (missing(rgroup)) rgroup <- rep("", length(n.rgroup)) else rgroup <- paste("{", sl, "bf ", rgroup, "}", sep = "") } linecnt <- 0 for (i in 1:nr) { if (!missing(rgroup)) { k <- rg.start == i if (any(k)) { j <- (1:length(n.rgroup))[k] if (longtable && linecnt > 0 && (linecnt + n.rgroup[j] + (n.rgroup[j] > 1)) > lines.page) { cat(sl, "newpage\n", sep = "", file = fi, append = TRUE) linecnt <- 0 } if (n.rgroup[j] > 1) { cat(rgroup[j], rep("", nc), file = fi, sep = "&", append = TRUE) linecnt <- linecnt + 1 cat(sl, sl, "\n", sep = "", file = fi, append = TRUE) } l <- rg.start[j]:rg.end[j] if (length(l) > 1) rowname[l] <- paste("~~", rowname[l], sep = "") else rowname[l] <- paste("{", sl, "bf ", rowname[l], "}", sep = "") } } else if (longtable && linecnt > 0 && (linecnt + 1 > lines.page)) { cat(sl, "newpage\n", sep = "", file = fi, append = TRUE) linecnt <- 0 } cat(c(rowname[i], cx[i, ]), file = fi, sep = "&", append = TRUE) linecnt <- linecnt + 1 if (i < nr && any(rg.end == i)) g <- paste(sl, "hline", sep = "") else g <- "" cat(sl, sl, " ", g, "\n", sep = "", file = fi, append = TRUE) } cat(sl, "hline", hline, "\n", sep = "", file = fi, append = TRUE) if (longtable) cat(sl, "end{longtable}\n", sep = "", file = fi, append = TRUE) else { cat(sl, "end{tabular}\n", sep = "", file = fi, append = TRUE) if (!missing(caption)) cat(sl, "vspace{3mm}\n", sep = "", file = fi, append = TRUE) cat(caption, "\n", file = fi, append = TRUE) cat(sl, "end{center}\n", sep = "", file = fi, append = TRUE) if (table.env) cat(sl, "end{table}\n", sep = "", file = fi, append = TRUE) } invisible() } "table.rq" <- function (formula, taus = c(0.25, 0.5, 0.75), method = "br", ...) { m <- length(taus) tab <- NULL for (i in 1:m) { fit <- rq(formula, taus[i], method = method) if(method=="fn") fit <- summary(fit) tab <- rbind(tab, coefficients(fit)) } p <- nrow(tab)/m colsfit <- 3 ctypes <- c("coefs", "lower ci limit", "upper ci limit") if(method == "fn") { colsfit <- 4 ctypes <- c("coefs", "se", "t-stat","P-value") } a <- array(tab, dim = c(p, m, colsfit)) vnames <- dimnames(coefficients(fit))[[1]] dimnames(a) <- list(vnames, paste("tau=", taus), ctypes) a <- aperm(a,c(1,3,2)) tab <- list(a = a, taus = taus, method = method) class(tab) <- "table.rq" invisible(tab) }