1 15 2 3 

1 1 0.25 

s m s 

3 2

1 200 200
1 400 400

1 350 350

1 6000 6000

1 0.00001 0.00001
1 0.00001 0.00001

1 -2.5 0.0 0.0 0.0 
1 -2.8 0.0 0.0 0.0 

0 
1 -6.0 0.0 0.0 0.0 
----------------------------------------------------------------------------------------
PopABC - Mark Beaumont & Joao Lopes                                             01/05/09

>nr_iterations, generation_time, nr_populations, nr_loci

>escalar per locus (autosome - 1; X-linked - 0.75; Y-linked or mitDNA - 0.25)

>type of DNA data (s - sequence; m - microssatelites)

>topology:       0 - uniform distribution;
                 3 - uniform distribution (and choose a Model marker);

>ne1 params:     1 - uniform distribtuion;
                 2 - generalized gamma distribution;
>ne2 params

>neanc1 params

>t1 params:      1 - uniform distribtuion;
                 2 - generalized gamma distribution;

>mig1 params:    0 - no migration;
                 1 - uniform distribtuion;
                 2 - generalized gamma distribution;
                 3 - uniform distribtuion (on number of migrations);
                 4 - generalized gamma distribution (on number of migrations).
                 [for 3 and 4 real mig rate is calculated as nmig/Ne]
>mig2 params

>mutM params:    0 - zero mutation;
                 1 - lognormal distribution: (mean of mean(log10); stdev of mean(log10);
                 mean of Sdev(log10); stdev of stdev(log10). Stdev truncated at 0.
                 2 - normal distribution: (mean of mean; stdev of mean; mean of Sdev;
                 stdev of stdev. Stdev truncated at 0.
>mutS params

>recM params:    0 - zero recombination;
                 1 - lognormal distribution: (mean of mean(log10); stdev of mean(log10);
                 mean of Sdev(log10); stdev of stdev(log10). Stdev truncated at 0.
                 2 - normal distribution: (mean of mean; stdev of mean; mean of Sdev;
                 stdev of stdev. Stdev truncated at 0.

>recS params
----------------------------------------------------------------------------------------
Tree topology:

      ||       Neanc1
      ||         |
      ||         |
    t1||     ---------
      ||     |       |
      ||     |       |
      \/    Ne1     Ne2