https://github.com/arjunrajlaboratory/RajLabSeqTools
Tip revision: c8b8c79b2ec9c1bd9eb7ced427bb2aec25f19506 authored by Benjamin Emert on 26 March 2020, 17:37:11 UTC
Updated reorganizeBasespaceFiles.py to better parse samples with same first index (e.g. sample 1 and sample10)
Updated reorganizeBasespaceFiles.py to better parse samples with same first index (e.g. sample 1 and sample10)
Tip revision: c8b8c79
README.philupds.md
###
Alterations to code:
2019/08/06
- running on MAC OSX "zcat" doesn't work. You need to use "zcat <" or "gunzip -c".
this makes it difficult to directly implement the wrapper. to deal with this I changed the
rules/align.cmk and rules/trim.cmk to have input and output that aren't gzipped.
