#!/usr/bin/env python # # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # # # # CitcomS.py by Eh Tan, Eun-seo Choi, and Pururav Thoutireddy. # Copyright (C) 2002-2005, California Institute of Technology. # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA # # # # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # ''' Paste and combine Citcom data Usage: batchcombine.py datadir datafile timestep nodex nodey nodez ncap nprocx nprocy nprocz ''' def machinefile2nodes(machinefile, totalnodes): try: nodelist = file(machinefile).readlines() except IOError: nodelist = machinefile.split() # check the length of nodelist n = len(nodelist) if not n == totalnodes: print 'WARNING: length of machinefile does not match number of processors, try to duplicate machinefile...' if (totalnodes > n) and ((totalnodes % n) == 0): # try to match number of processors by duplicating nodelist nodelist *= (totalnodes / n) else: raise ValueError, 'incorrect machinefile size' # generate a string of machine names nodes = '' for node in nodelist: nodes += '%s ' % node.strip() return nodes def combine(nodes, datadir, datafile, timestep, nodex, nodey, nodez, ncap, nprocx, nprocy, nprocz): import os # paste cmd = 'batchpaste.sh %(datadir)s %(datafile)s %(timestep)d %(nodes)s' \ % vars() print cmd os.system(cmd) # combine cmd = 'combine.py %(datafile)s %(timestep)d %(nodex)d %(nodey)d %(nodez)d %(ncap)d %(nprocx)d %(nprocy)d %(nprocz)d' % vars() print cmd os.system(cmd) # delete cmd = 'rm %(datafile)s.[0-9]*.%(timestep)d' % vars() print cmd os.system(cmd) # create .general file cmd = 'dxgeneral.sh %(datafile)s.cap*.%(timestep)d' % vars() print cmd os.system(cmd) return if __name__ == '__main__': import sys if not len(sys.argv) == 12: print __doc__ sys.exit(1) machinefile = sys.argv[1] datadir = sys.argv[2] datafile = sys.argv[3] timestep = int(sys.argv[4]) nodex = int(sys.argv[5]) nodey = int(sys.argv[6]) nodez = int(sys.argv[7]) ncap = int(sys.argv[8]) nprocx = int(sys.argv[9]) nprocy = int(sys.argv[10]) nprocz = int(sys.argv[11]) totalnodes = nprocx * nprocy * nprocz * ncap nodelist = machinefile2nodes(machinefile, totalnodes) combine(nodelist, datadir, datafile, timestep, nodex, nodey, nodez, ncap, nprocx, nprocy, nprocz) # version # $Id$ # End of file