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https://github.com/mirnylab/pdSim
30 April 2025, 21:23:45 UTC
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  • SLURM_job_submission.sh
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Tip revision: f08bd75aabf7213e253baf26d219c374a745c8d4 authored by Christopher McFarland on 04 February 2019, 22:56:03 UTC
refract
Tip revision: f08bd75
SLURM_job_submission.sh
#/bin/bash

# This is an example submission script of parameter_sweep_job.py that will run on Stanford's Sherlock2 Cluster.
# The cluster uses the SLURM job scheduler. 


NJOBS=2
DIRECTORY=`pwd`
NAME=`basename $DIRECTORY`
MEMORY="128GB" # Normal node contains 128 GB of memory & 20 cores
#MEMORY="196GB" # Normal node contains 128 GB of memory & 20 cores
NODES=1
CORES=20 #24
SCRIPT="$HOME/pdSim/parameter_sweep_job.py"
QUEUE="owners,hns"
TIME=2-0

sbatch --array 1-$NJOBS -J $NAME -D $DIRECTORY --mem=$MEMORY --get-user-env --time=$TIME -N $NODES -n $CORES -p $QUEUE --output=$DIRECTORY/%a.out --wrap $SCRIPT

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