# Copyright (C) 2015 UCSC Computational Genomics Lab # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. define help Supported targets: 'develop', 'docs', 'sdist', 'clean', 'test', 'pypi', or 'pypi_stable'. The 'develop' target creates an editable install (aka develop mode). Set the 'extras' variable to ensure that develop mode installs support for extras. Consult setup.py for a list of supported extras. To install Toil in develop mode with all extras, run make develop extras=[mesos,aws,azure,cwl,encryption] The 'sdist' target creates a source distribution of Toil suitable for hot-deployment (not implemented yet). The 'clean' target undoes the effect of 'develop', 'docs', and 'sdist'. The 'docs' target uses Sphinx to create HTML documentation in the docs/_build directory The 'test' target runs Toil's unit tests. Set the 'tests' variable to run a particular test, e.g. make test tests=src/toil/test/sort/sortTest.py::SortTest::testSort The 'pypi' target publishes the current commit of Toil to PyPI after enforcing that the working copy and the index are clean, and tagging it as an unstable .dev build. The 'pypi_stable' target is like 'pypi' except that it doesn't tag the build as an unstable build. IOW, it publishes a stable release. endef export help help: @echo "$$help" python=python2.7 pip=pip2.7 tests=src extras= green=\033[0;32m normal=\033[0m red=\033[0;31m develop: check_venv $(pip) install -e .$(extras) clean_develop: check_venv - $(pip) uninstall -y toil - rm -rf src/*.egg-info sdist: check_venv $(python) setup.py sdist clean_sdist: - rm -rf dist test: check_venv $(python) setup.py test --pytest-args "-vv $(tests)" pypi: check_venv check_clean_working_copy check_running_on_jenkins set -x \ && tag_build=`$(python) -c 'pass;\ from version import version as v;\ from pkg_resources import parse_version as pv;\ import os;\ print "--tag-build=.dev" + os.getenv("BUILD_NUMBER") if pv(v).is_prerelease else ""'` \ && $(python) setup.py egg_info $$tag_build sdist bdist_egg upload clean_pypi: - rm -rf build/ docs: check_venv cd docs && make html clean_docs: check_venv - cd docs && make clean clean: clean_develop clean_sdist clean_pypi clean_docs check_venv: @$(python) -c 'import sys; sys.exit( int( not hasattr(sys, "real_prefix") ) )' \ || ( echo "$(red)A virtualenv must be active.$(normal)" ; false ) check_clean_working_copy: @echo "$(green)Checking if your working copy is clean ...$(normal)" @git diff --exit-code > /dev/null \ || ( echo "$(red)Your working copy looks dirty.$(normal)" ; false ) @git diff --cached --exit-code > /dev/null \ || ( echo "$(red)Your index looks dirty.$(normal)" ; false ) @test -z "$$(git ls-files --other --exclude-standard --directory)" \ || ( echo "$(red)You have are untracked files:$(normal)" \ ; git ls-files --other --exclude-standard --directory \ ; false ) check_running_on_jenkins: @echo "$(green)Checking if running on Jenkins ...$(normal)" @test -n "$$BUILD_NUMBER" \ || ( echo "$(red)This target should only be invoked on Jenkins.$(normal)" ; false ) .PHONY: help develop clean_develop sdist clean_sdist test \ pypi pypi_stable clean_pypi docs clean_docs clean \ check_venv check_clean_working_copy check_running_on_jenkins