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  <div class="section" id="installation">
<h1>Installation<a class="headerlink" href="#installation" title="Permalink to this headline">ΒΆ</a></h1>
<p><strong>Dependencies</strong></p>
<ul class="simple">
<li>Tested using Python 3.4 on Linux-64.</li>
<li>Numpy-1.13.3 and Scipy-0.19.1.</li>
<li>Matplotlib is required for image display.</li>
<li>Continuum's <a class="reference external" href="https://www.continuum.io/downloads">Anaconda</a> environment should provide all the above packages.</li>
</ul>
<p><strong>Quick Installation</strong></p>
<p>Install pynufft by using <a class="reference external" href="https://en.wikipedia.org/wiki/Pip_(package_manager)">pip</a> command:</p>
<div class="highlight-default"><div class="highlight"><pre><span></span>$ pip install pynufft
</pre></div>
</div>
<p><strong>Installation from Git Repository</strong></p>
<p><a class="reference external" href="https://en.wikipedia.org/wiki/Git">git</a> is a version control program, which allows you to clone the latest code base from <a class="reference external" href="https://github.com/jyhmiinlin/pynufft">pynufft</a> repository:</p>
<div class="highlight-default"><div class="highlight"><pre><span></span>$ git clone https://github.com/jyhmiinlin/pynufft
$ cd pynufft
$ python setup.py install --user
</pre></div>
</div>
<p><strong>Test if the installation is successful</strong></p>
<p>In Python environment, import pynufft:</p>
<div class="highlight-default"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="kn">import</span> <span class="nn">pynufft.tests</span> <span class="k">as</span> <span class="nn">tests</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">tests</span><span class="o">.</span><span class="n">test_installation</span><span class="p">()</span>
</pre></div>
</div>
<p>If the required data and functions are available, you will see all the required files exist:</p>
<div class="highlight-default"><div class="highlight"><pre><span></span>Does pynufft.py exist?  True
Does om1D.npz exist? True
Does om2D.npz exist? True
Does om3D.npz exist? True
Does phantom_3D_128_128_128.npz exist? True
Does phantom_256_256.npz exist? True
Does example_1D.py exist? True
Does example_2D.py exist? True
reikna  has been installed.
pyopencl  has been installed.
pycuda  has been installed.
</pre></div>
</div>
<p><strong>Uninstall pynufft</strong></p>
<p>Simply use &quot;pip uninstall&quot; to remove pynufft:</p>
<div class="highlight-default"><div class="highlight"><pre><span></span>$ pip uninstall pynufft
</pre></div>
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