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To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

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Citations

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

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Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
/*!
 * \file itkOxT1ImageFilter_test.cpp
 * \author Konrad Werys
 * \date 2018/08/13
 */

#include "CmakeConfigForTomato.h"
#ifdef USE_ITK

#include "gtest/gtest.h"
#include "OxTestItkImagesFactory.h"

#ifdef USE_VTK
#include "QuickView.h"
#include "itkExtractImageFilter.h"
#endif //USE_VTK

TEST(OxTestItkImagesFactory, generateImagesWithoutErrros) {

    bool doVisualise = false; //for debugging

    typedef double TYPE;
    typedef itk::Image <TYPE, 2> Image2dType;
    typedef itk::Image <TYPE, 3> Image3dType;

    std::vector< std::string > filePaths;
    filePaths.push_back("testData/blood.yaml");
    filePaths.push_back("testData/myocardium.yaml");

    int nRows = 30; //y
    int nCols = 20; //x

    Ox::TestItkImagesFactory<TYPE> itkImagesFactory(nRows, nCols, filePaths);

    Image3dType::Pointer imageMag = itkImagesFactory.generateImageMag();
    Image3dType::Pointer imagePha = itkImagesFactory.generateImagePha();

    Image2dType::Pointer imageMolliA = itkImagesFactory.generateImageResultsMolliA();
    Image2dType::Pointer imageMolliB = itkImagesFactory.generateImageResultsMolliB();
    Image2dType::Pointer imageMolliT1star = itkImagesFactory.generateImageResultsMolliT1star();
    Image2dType::Pointer imageShmolliA = itkImagesFactory.generateImageResultsShmolliA();
    Image2dType::Pointer imageShmolliB = itkImagesFactory.generateImageResultsShmolliB();
    Image2dType::Pointer imageShmolliT1star = itkImagesFactory.generateImageResultsShmolliT1star();

#ifdef USE_VTK
    if (doVisualise){

        // see if pha is ok
        typedef itk::ExtractImageFilter< Image3dType, Image2dType > ExtractFilterType;
        ExtractFilterType::Pointer extractFilter = ExtractFilterType::New();

        ExtractFilterType::InputImageIndexType extrindex;
        extrindex.Fill(0);
        extrindex[2] = 6;
        ExtractFilterType::InputImageSizeType size = imagePha->GetLargestPossibleRegion().GetSize();
        size[2] = 0;
        ExtractFilterType::InputImageRegionType region = imagePha->GetLargestPossibleRegion();
        region.SetSize(size);
        region.SetIndex(extrindex);
        extractFilter->SetExtractionRegion(region);
        extractFilter->SetInput(imagePha);
        extractFilter->SetDirectionCollapseToSubmatrix();

        // add a zero pixel to check indexing
        itk::Image <TYPE, 2>::IndexType index;
        index[0] = 1;
        index[1] = 2;
        imageMolliA->SetPixel(index, 0);

        // view
        QuickView viewer;
        viewer.AddImage(extractFilter->GetOutput(), true, "imagePha 0");
        viewer.AddImage(imageMolliA.GetPointer(), true, "Molli A");
        viewer.AddImage(imageMolliB.GetPointer(), true, "Molli B");
        viewer.AddImage(imageMolliT1star.GetPointer(), true, "Molli T1star");
        viewer.AddImage(imageShmolliA.GetPointer(), true, "Shmolli A");
        viewer.AddImage(imageShmolliB.GetPointer(), true, "Shmolli B");
        viewer.AddImage(imageShmolliT1star.GetPointer(), true, "Shmolli T1start");
        viewer.Visualize();
    }
#endif

    EXPECT_TRUE(true);
}

#endif //USE_ITK

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The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Contact— JavaScript license information— Web API

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