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Tip revision: c4c819e3ad5828b953fbd2ec05163e590518ae4b authored by emsanford on 17 December 2020, 01:16:43 UTC
Tip revision: c4c819e
# atac-seq_pipeline_paired-end
Slightly customized version of the ENCODE ATAC-seq v1 pipeline. Made to run on Penn's high performance cluster (PMACS). The ENCODE ATAC-Seq pipeline v1 specifications are listed in this google doc: (specs at

## Instructions for installing and running the pipeline are maintained at this google doc:

#### Additional info
This pipeline uses specific features of the PMACS high performance cluster at Penn. Some of the pipeline's reference files and required software are in a folder that is only available to Raj lab members. Please email me if you would like me a copy of these reference files.
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